PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.08G295800.1.p | ||||||||
Common Name | GLYMA_08G295800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 321aa MW: 36687.7 Da PI: 4.5222 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.7 | 4.2e-18 | 81 | 134 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t++q++ Le+ Fe ++++ e++ +LAk+lg++ rqV +WFqNrRa+ k Glyma.08G295800.1.p 81 KKRRLTSKQVQFLESNFEVENKLEPERKVQLAKELGMQPRQVAIWFQNRRARFK 134 56689***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 126.9 | 8.9e-41 | 81 | 172 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 kkrrl+++qv++LE++Fe e+kLeperKv+la+eLg+qprqva+WFqnrRAR+ktkqlEkdy +Lk++yd lk++ ++L +e ++L+ee+ Glyma.08G295800.1.p 81 KKRRLTSKQVQFLESNFEVENKLEPERKVQLAKELGMQPRQVAIWFQNRRARFKTKQLEKDYGVLKASYDVLKRDYDNLLQESDKLKEEV 170 9**************************************************************************************999 PP HD-ZIP_I/II 92 ke 93 ++ Glyma.08G295800.1.p 171 NS 172 75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.61E-19 | 73 | 138 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.827 | 76 | 136 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.0E-16 | 78 | 140 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.43E-15 | 79 | 137 | No hit | No description |
Pfam | PF00046 | 1.3E-15 | 81 | 134 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-19 | 83 | 143 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.0E-5 | 107 | 116 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 111 | 134 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.0E-5 | 116 | 132 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 4.4E-16 | 136 | 177 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MAGEKLHEGS SMTLLLQKER LTCSPELIRS FWVQNSESSF QGSKSLANVV NVTQRPFFQG 60 LEKEENGEDE DFGVCLNQPG KKRRLTSKQV QFLESNFEVE NKLEPERKVQ LAKELGMQPR 120 QVAIWFQNRR ARFKTKQLEK DYGVLKASYD VLKRDYDNLL QESDKLKEEV NSLKTRLIPR 180 EQEEQNLDDT SCDAVNSQHK EQKDLITNTV SENGSKVPLP VTVTSKQEDA NSAKSDVLDS 240 DSPHFTDGNQ FSLMEPADSS HAVEPDHSAF SQDEEDILSQ NILTMPFLPK VEDVCYDEPH 300 EDSCSFRFPV EDQTFCFWSY * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 128 | 136 | RRARFKTKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.08G295800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-110 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003553206.1 | 0.0 | homeobox-leucine zipper protein HOX20 isoform X1 | ||||
Refseq | XP_028213741.1 | 0.0 | homeobox-leucine zipper protein HOX20-like | ||||
TrEMBL | K7L9Q7 | 0.0 | K7L9Q7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA08G40705.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1500 | 34 | 99 | Representative plant | OGRP129 | 16 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 1e-42 | homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.08G295800.1.p |