PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.08G282500.1.p | ||||||||
Common Name | GLYMA_08G282500, LOC100789068 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 190aa MW: 21325.2 Da PI: 9.5326 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 64.2 | 1.4e-20 | 12 | 57 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++ rqvtfskRr g++KKA+ELS+LC++e+a+++fs +k y + Glyma.08G282500.1.p 12 KDPNTRQVTFSKRRSGLFKKANELSILCGVEIAMVVFSIGNKPYSF 57 66778*********************************98887766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.4E-31 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.03E-25 | 1 | 76 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.833 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-19 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-23 | 12 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-19 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-19 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MGRRKIEIAE VKDPNTRQVT FSKRRSGLFK KANELSILCG VEIAMVVFSI GNKPYSFGHP 60 SVDVVATKFL QQATTNSNDD AQGKNNNNPN SNEVVDGDNM ERLNQQLSNL QAQILEEEKK 120 GARHDERLKQ HEVTQVSQYA ELQGSCLELQ RKVKDNVDAI EVSECMLLLA KEPVVGVRKQ 180 MTTKKRRKN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 1e-17 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 1e-17 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 1e-17 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 1e-17 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 183 | 187 | KKRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.08G282500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003530630.1 | 1e-138 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A0B2Q0B8 | 1e-137 | A0A0B2Q0B8_GLYSO; Agamous-like MADS-box protein AGL61 | ||||
TrEMBL | K7L9G5 | 1e-137 | K7L9G5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA08G38880.2 | 1e-137 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2424 | 29 | 79 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 2e-33 | AGAMOUS-like 29 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.08G282500.1.p |
Entrez Gene | 100789068 |