PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G281900.1.p
Common NameGLYMA_08G281900, LOC102665767
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 355aa    MW: 39625.9 Da    PI: 7.6506
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G281900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.2e-174797256
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                         +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g+
  Glyma.08G281900.1.p 47 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAAFAYDCAARAMRGA 97
                         59*******.**********93....35999**********************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.94E-2147104IPR016177DNA-binding domain
PfamPF008478.8E-114796IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-2947103IPR001471AP2/ERF domain
CDDcd000184.75E-3047103No hitNo description
SMARTSM003806.1E-3247110IPR001471AP2/ERF domain
PROSITE profilePS5103222.19447104IPR001471AP2/ERF domain
PRINTSPR003671.8E-94859IPR001471AP2/ERF domain
PRINTSPR003671.8E-97086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MEEALRRLNG MGPTQDPDTT LSDHHPKKSA TTKRGLRDTA SSGGTMRYRG VRRRPWGRYA  60
AEIRDPQSKE RRWLGTFDTA EEAAFAYDCA ARAMRGAKAR TNFVYPDAAD PHHHHLFQPY  120
NINPKHCHVT RFVPNQNLNA DFSANSHNNN NNNVSSSLNM VLFRDFLNSS SHHFHNNNNK  180
SSSCYVNSSS SSAAANNCLQ GCCFTNPNLG MEVAEAIDEE SDFFPIESSD SGLLEEIVHK  240
FLPKSKPKKE TLSVPESLPP QQKFELKNVS AARGCADTRT RVPKVEAFGA PYDSSTMQHQ  300
FEAIHHGFNT MQGVSVERNN QFLMNHVAAG CSNLEDFLQY PEIFNSLVAR MQNA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-19471161477Ethylene-responsive transcription factor ERF096
Search in ModeBase
Function -- GeneRIF ? help Back to Top
  1. The LF1 gene controls leaflet number in soybean. The Lf1 gene most likely exerts a pleiotropic effect on the number of seeds per pod.
    [PMID: 28516383]
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G281900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001344418.10.0putative AP2 domain-containing protein Lf1
TrEMBLK7L9F60.0K7L9F6_SOYBN; AP2 domain-containing protein
STRINGGLYMA08G38800.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41003256
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.16e-15DORNROSCHEN-like
Publications ? help Back to Top
  1. Jeong SC,Kim JH,Bae DN
    Genetic analysis of the Lf1 gene that controls leaflet number in soybean.
    Theor. Appl. Genet., 2017. 130(8): p. 1685-1692
    [PMID:28516383]