PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.08G278800.1.p | ||||||||
Common Name | GLYMA_08G278800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 181aa MW: 20423.4 Da PI: 10.7904 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.7 | 9.1e-16 | 3 | 52 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr+++eIrdps+ + r++lg+f+tae +a++ a++++ g Glyma.08G278800.1.p 3 HFRGVRKRP-WGRYASEIRDPSK---KSRVWLGTFDTAEATTRAYDVAAREFCG 52 69*******.**********965...6**********************99866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.68 | 3 | 60 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.85E-28 | 3 | 60 | No hit | No description |
Pfam | PF00847 | 1.9E-9 | 3 | 52 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-35 | 3 | 66 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.4E-19 | 3 | 61 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.1E-30 | 3 | 60 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-9 | 4 | 15 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-9 | 26 | 42 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MVHFRGVRKR PWGRYASEIR DPSKKSRVWL GTFDTAEATT RAYDVAAREF CGPKTKTNFP 60 LPLENPRLRR LRRSLASRPQ PCPRRSRIRS IPLPALYRRG AAANPFLYYD VVLCAGMGGP 120 RGFAFGYNHH PVAATEFHAT TSDLDSSSSS VIDLMKVKGK FPESSIQIRI NEDALYNIFY 180 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-18 | 3 | 61 | 5 | 64 | ATERF1 |
3gcc_A | 6e-18 | 3 | 61 | 5 | 64 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.34955 | 1e-74 | cotyledon| epicotyl| flower| hypocotyl| leaf| meristem| root| stem | ||||
Gma.6380 | 1e-74 | cotyledon| epicotyl| flower| hypocotyl| leaf| meristem| pod| root| seed coat| somatic embryo |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.08G278800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC236210 | 1e-107 | AC236210.2 Glycine max clone GM_WBc0012G22, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001238595.2 | 2e-43 | ethylene-responsive element binding factor 4 | ||||
Refseq | XP_028190920.1 | 2e-43 | ethylene-responsive transcription factor 4-like | ||||
TrEMBL | A0A0R0ITQ2 | 1e-130 | A0A0R0ITQ2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA08G38171.1 | 1e-110 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 2e-29 | erf domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.08G278800.1.p |