PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G274200.1.p
Common NameGLYMA_08G274200, Glyma08g37240.1, LOC100790319
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 321aa    MW: 35966.8 Da    PI: 4.6272
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G274200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.7e-12161204654
                          HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                           ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Glyma.08G274200.1.p 161 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 204
                          589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.491155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-15158220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9161204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.49E-5162208No hitNo description
Gene3DG3DSA:4.10.280.106.5E-15162216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MELSQLGFLE ELVAPRRDSW NALSTGFCEL LSNGCCWSFD TFLENPTFGA FSAPRFDSPY  60
SSEVSAAYPF AADGFTMPLS ELDPGSDEPP PPPPLPPSLE DAEIGFHDNN NKKKNNFEET  120
KVVCKVEEKD REIPLFKIGM CDDGERKPKS KKLEGQPSKN LMAERRRRKR LNDRLSMLRS  180
IVPKISKMDR TSILGDTIDY MKELLERIGK LQEEEGTSQI NLLGISREQL KPNEAIFDVE  240
RRDQDTRISI CCATKPGLLL STVNTLEAIG LEIQQCVVSS FNDFSVEASC SEVAEQRDCI  300
HPEEIKQALF RNAGFGEKCL *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163170ERRRRKRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.240750.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Broadly expressed. {ECO:0000269|PubMed:17088607}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G274200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311120.0KT031112.1 Glycine max clone HN_CCL_214 bHLH transcription factor (Glyma08g37240.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003531971.10.0transcription factor bHLH93
SwissprotQ9LSL14e-76BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A445JKT70.0A0A445JKT7_GLYSO; Transcription factor bHLH93
TrEMBLI1KX420.0I1KX42_SOYBN; BHLH transcription factor
STRINGGLYMA08G37240.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118634103
Representative plantOGRP26361130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.12e-78beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]
  4. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  5. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  6. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]