PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G269800.1.p
Common NameGLYMA_08G269800, LOC100783045
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 237aa    MW: 27428.4 Da    PI: 8.5845
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G269800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.94.3e-31959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gkl+ey++
  Glyma.08G269800.1.p  9 KRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYAT 59
                         79***********************************************86 PP
2K-box1072.2e-35751741100
                K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                          y++++ ++++++++ +++ e+++Lk++i+ Lqr++Rh++GedL+s+slkeLq+LeqqL+++lk+iR+++n+l++e+i+el kkek +qe+
  Glyma.08G269800.1.p  75 YAERQLVANDSETQGNWTIEYTRLKAKIDLLQRNHRHYMGEDLGSMSLKELQSLEQQLDTALKQIRTRRNQLMYESISELEKKEKVIQEQ 164
                          567778888899999*************************************************************************** PP

                K-box  91 nkaLrkklee 100
                          n++L kk++e
  Glyma.08G269800.1.p 165 NNMLAKKIKE 174
                          *******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.394161IPR002100Transcription factor, MADS-box
SMARTSM004327.7E-41160IPR002100Transcription factor, MADS-box
CDDcd002651.71E-42279No hitNo description
SuperFamilySSF554555.49E-34292IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003197.2E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-313859IPR002100Transcription factor, MADS-box
PfamPF014864.9E-3085172IPR002487Transcription factor, K-box
PROSITE profilePS5129716.92288178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRAGLLK KAHEISVLCD AEVALIVFSH KGKLFEYATD  60
SCMEKILERY ERYAYAERQL VANDSETQGN WTIEYTRLKA KIDLLQRNHR HYMGEDLGSM  120
SLKELQSLEQ QLDTALKQIR TRRNQLMYES ISELEKKEKV IQEQNNMLAK KIKEKEKVAA  180
SQAQWEHPNH GVNASFLLPQ PLLNMGGNYH DEAPEVGRHE LDLTLEPLYS CHLGCF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-22173172MEF2C
5f28_B5e-22173172MEF2C
5f28_C5e-22173172MEF2C
5f28_D5e-22173172MEF2C
6byy_A5e-22174173MEF2 CHIMERA
6byy_B5e-22174173MEF2 CHIMERA
6byy_C5e-22174173MEF2 CHIMERA
6byy_D5e-22174173MEF2 CHIMERA
6bz1_A5e-22174173MEF2 CHIMERA
6bz1_B5e-22174173MEF2 CHIMERA
6bz1_C5e-22174173MEF2 CHIMERA
6bz1_D5e-22174173MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.161410.0flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G269800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5887440.0AB588744.1 Vigna unguiculata VuAP1 mRNA for APETALA1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003531957.11e-177truncated transcription factor CAULIFLOWER A
RefseqXP_028247247.11e-177truncated transcription factor CAULIFLOWER A-like
SwissprotQ6E6S71e-136AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A0B2RVQ11e-175A0A0B2RVQ1_GLYSO; Floral homeotic protein APETALA 1
TrEMBLI1KX101e-175I1KX10_SOYBN; Uncharacterized protein
STRINGGLYMA08G36380.11e-176(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-107MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]