PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.08G261500.1.p | ||||||||
Common Name | GLYMA_08G261500, LOC102667919 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 365aa MW: 40159.3 Da PI: 4.2829 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53 | 8.8e-17 | 109 | 156 | 2 | 53 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkl 53 +ykGVr +k +g+W+AeIrd + + +r++lg+f taeeA +a++ r+++ Glyma.08G261500.1.p 109 KYKGVRMRK-WGKWAAEIRDpF-----KgTRIWLGTFSTAEEASQAYETRRLEF 156 8******99.**********55.....45******************9777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.07E-16 | 109 | 155 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.95E-23 | 109 | 149 | No hit | No description |
SMART | SM00380 | 1.0E-18 | 109 | 163 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-21 | 109 | 156 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-9 | 109 | 156 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.203 | 109 | 166 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.7E-10 | 110 | 121 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.7E-10 | 132 | 148 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MVEPLNQSTP RTKKMKHKRN PIHDSKMTRK LRIICNDPDA TDSSSDEDEY FGNVRKMKRT 60 VLEIALPPVP VNPVVADETS TESTNNDELN QTKRVMAKTP SVKRQSCGKY KGVRMRKWGK 120 WAAEIRDPFK GTRIWLGTFS TAEEASQAYE TRRLEFEVMA KALSDEKSNN GSSNNNVVAS 180 AETETVAAPE NNSSNYYVSS AAGSVSDSKS AFMDESESVL SHTSPSSVLE LDTSASNLIG 240 SGKVSSNEIV ETKGLEAEVA ETKSLAAEFA ELEIQDLSML NVPSPSAVAA ATSEYELDLL 300 AFDSFKYGFD YEHGFDDDFA ALEDIHICSF DDNEPSELPD YDFDDFGADE FAGWIEEPLN 360 IPCV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-12 | 108 | 150 | 13 | 56 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.45602 | 3e-31 | somatic embryo |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.08G261500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235272 | 0.0 | AC235272.1 Glycine max strain Williams 82 clone GM_WBb0046N03, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006585851.1 | 0.0 | ethylene-responsive transcription factor ERF118 | ||||
Refseq | XP_006585852.1 | 0.0 | ethylene-responsive transcription factor ERF118 | ||||
Refseq | XP_006585853.1 | 0.0 | ethylene-responsive transcription factor ERF118 | ||||
TrEMBL | K7L8Z1 | 0.0 | K7L8Z1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA08G30716.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2690 | 34 | 72 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68550.2 | 4e-31 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.08G261500.1.p |
Entrez Gene | 102667919 |