PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G257300.1.p
Common NameGLYMA_08G257300, LOC100796624
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 278aa    MW: 31189.9 Da    PI: 6.6525
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G257300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-2092142155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          ++y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae+Aa a+++a++k++g
  Glyma.08G257300.1.p  92 PHYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAEDAALAYDKAALKFKG 142
                          68********.**********94....45************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.9E-1492142IPR001471AP2/ERF domain
CDDcd000188.66E-3592151No hitNo description
SMARTSM003803.5E-3993156IPR001471AP2/ERF domain
PROSITE profilePS5103224.82993150IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-3393151IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-2293151IPR016177DNA-binding domain
PRINTSPR003671.1E-1194105IPR001471AP2/ERF domain
PRINTSPR003671.1E-11116132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MQYGKLPLSS QASEEKEGTV EDFDAYNNYA SWSSETDMSE MVSALSQVMG TTNRNPHMPQ  60
SNSFPSSTSV VKDQPQPYPS QPPPDQEVTK KPHYRGVRQR PWGKWAAEIR DPKKAARVWL  120
GTFETAEDAA LAYDKAALKF KGTKAKLNFP ERLHQNVPYM QQHQQGSSNR NVFPFHATSS  180
TSSSATGSVS SLDAVAPPSL STHDHQVFPN LYQYAQILSS GDEEFPYYTS HLFNQQQQHQ  240
PFSSQFSTTF SSSSSPSSYF YNQQQQYDQQ GHDHSNH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2893153263ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-2890154267ATERF1
3gcc_A3e-2890154267ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.365570.0cotyledon| meristem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the S phase of the cell cycle. {ECO:0000269|PubMed:23616605}.
UniprotTISSUE SPECIFICITY: Strongly expressed in proliferating cells. Detected in root tips, stipules, shoot apex, floral tissues, young siliques and abscission zones. {ECO:0000269|PubMed:23616605}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G257300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0914680.0BT091468.1 Soybean clone JCVI-FLGm-8E17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003530479.20.0ethylene-responsive transcription factor ERF113
RefseqXP_028247029.10.0ethylene-responsive transcription factor ERF113-like
SwissprotQ9FH545e-43EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A0B2SRL00.0A0A0B2SRL0_GLYSO; Ethylene-responsive transcription factor ERF114
TrEMBLK7L8W50.0K7L8W5_SOYBN; Uncharacterized protein
STRINGGLYMA08G28835.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98534115
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.14e-33ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]