PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.08G247300.1.p | ||||||||
Common Name | GLYMA_08G247300, LOC100807091 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | TCP | ||||||||
Protein Properties | Length: 356aa MW: 39391.2 Da PI: 8.6881 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 103.5 | 3.5e-32 | 52 | 169 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.........seceaesssssa 82 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ +++ s++++++ s+ Glyma.08G247300.1.p 52 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLNAAKHEIDELPPLPIIPSvnnftlgypSAVTSNEATTSN 141 689*************************************************************66666543333322222222222222 PP TCP 83 snsssg.....................k 89 s+++++ k Glyma.08G247300.1.p 142 SQPNEQllninrsiqwedsnhnstwklK 169 2222223334344444432222222220 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.7E-29 | 54 | 184 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.337 | 54 | 112 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MIKSQKEADF QLKQEGLSQS INDPEKAKAT SSSVAQWPRL KDPRIVRVSR AFGGKDRHSK 60 VCTIRGLRDR RVRLSVPTAI QLYDLQDRLG LSQPSKVVDW LLNAAKHEID ELPPLPIIPS 120 VNNFTLGYPS AVTSNEATTS NSQPNEQLLN INRSIQWEDS NHNSTWKLKA KEVSGEMVST 180 DKPNWISRSQ EDKQGSNNQG PSTHVIPNIN LLPRANLNHP SFLGLLNTMP HGYRWEHSAG 240 DVSHPLGNNE LSNLTDIHNN INVVPFPTSS LSLSTGNSQI MLCPPGATQP YFPSHVTAMD 300 MDPRQINHYQ MLSSGSENPL ANSLNHSFSL AMMAHKPLLS PNSSKSPSHK DQDFP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 5e-18 | 59 | 113 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 5e-18 | 59 | 113 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.62276 | 0.0 | cotyledon| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.08G247300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003530446.1 | 0.0 | transcription factor TCP13 | ||||
Refseq | XP_014634720.1 | 0.0 | transcription factor TCP13 | ||||
TrEMBL | K7L8P5 | 0.0 | K7L8P5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA08G27155.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF932 | 34 | 119 | Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 1e-41 | plastid transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.08G247300.1.p |
Entrez Gene | 100807091 |