PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G240800.1.p
Common NameGLYMA_08G240800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 524aa    MW: 56830.3 Da    PI: 8.1539
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G240800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.17.8e-33229286260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          dDgynWrKYGqK+vkgse+prsYY+Ct+ +C vkkkver+  d++++ei+Y+g+Hnhek
  Glyma.08G240800.1.p 229 DDGYNWRKYGQKQVKGSEYPRSYYKCTHLNCVVKKKVERAP-DGHITEIIYKGQHNHEK 286
                          8****************************************.***************85 PP
2WRKY106.61.3e-33409467159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver++ dpk+v++tYeg+Hnh+
  Glyma.08G240800.1.p 409 LDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASMDPKAVITTYEGKHNHD 467
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-28220288IPR003657WRKY domain
PROSITE profilePS5081123.606223287IPR003657WRKY domain
SuperFamilySSF1182901.24E-25227287IPR003657WRKY domain
SMARTSM007749.7E-36228286IPR003657WRKY domain
PfamPF031061.3E-24229285IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.2E-37394469IPR003657WRKY domain
SuperFamilySSF1182903.92E-29401469IPR003657WRKY domain
PROSITE profilePS5081138.882404469IPR003657WRKY domain
SMARTSM007742.2E-39409468IPR003657WRKY domain
PfamPF031062.9E-26410467IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MSTPNTDSGT APPPRPTITL PPRPSAEAFF SAAAGASPGP MTLVSSFFGS DAAADCRSFS  60
QLLAGAMASP MAFSAAAAAA DNSGKDDDGP HKGFKQSRPM NLVIARSPVF TVPPGLSPSG  120
FLNSPGFFSP QSPFGMSHQQ ALAQVTAQAV LAQSHMHMQA DYQMPAVTAP TEPPVRQLSF  180
ALNEASEQQV VSCVSSVSEP RNAQLEAPEL SQADKKYQPS SQAIDKPADD GYNWRKYGQK  240
QVKGSEYPRS YYKCTHLNCV VKKKVERAPD GHITEIIYKG QHNHEKPQAN RRAKDNSDSN  300
GNVTVQPKSE SNSQGWVGQL NKFSEKIPDS SVAKSDQTSN QGAPPRQLLP GSSESEEVGD  360
VDNREEADDG EPNPKRRNTD VGVSEVPLSQ KTVTEPKIIV QTRSEVDLLD DGYRWRKYGQ  420
KVVKGNPHPR SYYKCTSAGC NVRKHVERAS MDPKAVITTY EGKHNHDVPA ARNSSHNTAS  480
SNSMPLKPHN VVPEKHPLLK DMDFGSTDQR PVHLRLKEEQ IIV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-40229470878Probable WRKY transcription factor 4
2lex_A7e-40229470878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.35100.0cotyledon| flower| hypocotyl| leaf| seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G240800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3753550.0EU375355.1 Glycine max transcription factor (WRKY4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237655.20.0transcription factor
RefseqXP_028244947.10.0probable WRKY transcription factor 4
SwissprotQ9ZQ701e-145WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A445JJA30.0A0A445JJA3_GLYSO; Putative WRKY transcription factor 3 isoform A
TrEMBLI1KWA90.0I1KWA9_SOYBN; Uncharacterized protein
STRINGGLYMA08G26230.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-120WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]