PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G232700.1.p
Common NameGLYMA_08G232700, LOC100801417
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 509aa    MW: 55232.3 Da    PI: 7.7376
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G232700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.31.7e-10146171227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          +++ C +++ t tCk+Gd+CkF H++
  Glyma.08G232700.1.p 146 GEKDCAHYMLTRTCKFGDSCKFDHPF 171
                          7889********************95 PP
2zf-CCCH34.82.9e-11196222127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++ C++f++t  Ck+G++CkF+H++
  Glyma.08G232700.1.p 196 PGEPDCPYFLKTQRCKFGSKCKFNHPK 222
                          5789*********************96 PP
3zf-CCCH38.81.6e-12240264327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +++C f+++tG C+yG+ CkF+H++
  Glyma.08G232700.1.p 240 EPPCAFYMKTGKCRYGAACKFHHPK 264
                          79*********************96 PP
4zf-CCCH39.11.2e-12317340326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                          ++ C+f+++tG CkyG +C+++H+
  Glyma.08G232700.1.p 317 EVDCPFYMKTGSCKYGVTCRYNHP 340
                          689********************9 PP
5zf-CCCH39.31.1e-12403426326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                          + +C+f+++tG+Ck+G+rCk++H+
  Glyma.08G232700.1.p 403 QIECDFYMKTGECKFGERCKYHHP 426
                          568********************8 PP
6zf-CCCH40.64.2e-13454477427
                          ---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                          ++C+++++tGtCk+G++CkF H+p
  Glyma.08G232700.1.p 454 VICPYYLKTGTCKFGATCKFDHPP 477
                          68********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.002144171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.235144172IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-5144171IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-8146171IPR000571Zinc finger, CCCH-type
SMARTSM003569.3E-6195222IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.187195223IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-8197222IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-5200221IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-4201220IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-6237264IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.014237265IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-10240264IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-6241265IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5242263IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-6314341IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.051314342IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-10317340IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5318341IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-4320339IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-6400427IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413400428IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6402428IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-10404426IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.0E-5406426IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-8450477IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.286450478IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-10454477IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-5454477IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.0E-6455475IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MENHIYASSY SPSTNYRSFR DHPAADAMFL SHHLHHRTDA SDAAAFRFPS SALSAVEAAD  60
IAPPGVTSRI ASSAASANFL SSWPPVAAAA AVPSALDLKR SSDALYHPTI LGTIGQSEAW  120
YSTNPLAKRP RYESASNMTI YPQRPGEKDC AHYMLTRTCK FGDSCKFDHP FWVPEGGIPD  180
WKEVPIVTSE TPPERPGEPD CPYFLKTQRC KFGSKCKFNH PKVSSENADV SSGLPERPSE  240
PPCAFYMKTG KCRYGAACKF HHPKDIQIQL SNDSSQTVAQ TQTNSIMGWA TGDTPPIQSL  300
ISPSLQNSKG LPVRLGEVDC PFYMKTGSCK YGVTCRYNHP DRNAINPPIA GLGASIFPSS  360
AANLNIGLLN PAVSVYQAFE PRLSNPMSQV GIADTIYPQR PGQIECDFYM KTGECKFGER  420
CKYHHPIDRS APSLSKQATV KLTPAGLPRR EGAVICPYYL KTGTCKFGAT CKFDHPPPGE  480
VMEMAKSQGT SANGGEAEGD EIETSAQL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.283690.0cotyledon| hypocotyl| meristem| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in inflorescences, at intermediate levels in leaves and stems and at lower levels in roots. {ECO:0000269|PubMed:11595801}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G232700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352781e-120AC235278.1 Glycine max strain Williams 82 clone GM_WBb0048F23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006585719.10.0zinc finger CCCH domain-containing protein 37
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLI1KW270.0I1KW27_SOYBN; Uncharacterized protein
STRINGGLYMA08G25050.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75583345
Representative plantOGRP67541519
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)