PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G221800.6.p
Common NameGLYMA_08G221800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 272aa    MW: 30037.3 Da    PI: 6.7471
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G221800.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA46.84.2e-15226260133
                 GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
                          C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ k
  Glyma.08G221800.6.p 226 CRHCGISEksTPMMRRGPEGPRTLCNACGLMWANK 260
                          *****99999**********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009792.8E-1182117IPR010399Tify domain
PROSITE profilePS5132014.53282117IPR010399Tify domain
PfamPF062001.4E-1287116IPR010399Tify domain
PfamPF062032.4E-15150192IPR010402CCT domain
PROSITE profilePS5101712.927150192IPR010402CCT domain
SMARTSM004014.7E-7220269IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.71E-10221262No hitNo description
Gene3DG3DSA:3.30.50.101.0E-13224264IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.67E-11225260No hitNo description
PfamPF003206.1E-13226260IPR000679Zinc finger, GATA-type
PROSITE patternPS003440226253IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MDGIHGGDSR IHITDGQHPI HVPYVQEHEH HGLHHISNGN GIDDDHNDGG DTNCGGSESM  60
EGEVPSNHGN LPDNHAVMMD QGGDSGDQLT LSFQGQVYVF DSVSPEKVQA VLLLLGGREI  120
PPTMPAMPVS PNHNNRGYTG TPQKFSVPQR LASLIRFREK RKERNYDKKI RYTVRKEVAL  180
RMQRNKGQFT SSKSNNDESA SNATNWGMDE NWTADNSGSQ QQDIVCRHCG ISEKSTPMMR  240
RGPEGPRTLC NACGLMWANK ECDKNLGRII L*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.140080.0cotyledon| hypocotyl| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G221800.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-125AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014634654.10.0GATA transcription factor 28 isoform X2
RefseqXP_028244717.10.0GATA transcription factor 28-like isoform X2
SwissprotQ8H1G01e-124GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A0R0IQS80.0A0A0R0IQS8_SOYBN; Uncharacterized protein
TrEMBLA0A0R0IX500.0A0A0R0IX50_SOYBN; Uncharacterized protein
STRINGGLYMA08G23720.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-117ZIM-LIKE 2