PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G221800.4.p
Common NameGLYMA_08G221800, LOC100812262
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 298aa    MW: 32804.8 Da    PI: 7.1617
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G221800.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.51.2e-15260294133
                 GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
                          C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ k
  Glyma.08G221800.4.p 260 CRHCGISEksTPMMRRGPEGPRTLCNACGLMWANK 294
                          *****99999**********************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575133No hitNo description
PROSITE profilePS5132014.532116151IPR010399Tify domain
SMARTSM009792.8E-11116151IPR010399Tify domain
PfamPF062001.6E-12121150IPR010399Tify domain
PfamPF062032.7E-15184226IPR010402CCT domain
PROSITE profilePS5101712.927184226IPR010402CCT domain
SMARTSM004013.1E-5254297IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.47E-10255294No hitNo description
Gene3DG3DSA:3.30.50.106.9E-14258294IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.34E-10259294No hitNo description
PROSITE patternPS003440260287IPR000679Zinc finger, GATA-type
PfamPF003201.5E-13260294IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MLSLKCFKCL QSLFVLSVAK GGFPCCWCFG SSCIMDGIHG GDSRIHITDG QHPIHVPYVQ  60
EHEHHGLHHI SNGNGIDDDH NDGGDTNCGG SESMEGEVPS NHGNLPDNHA VMMDQGGDSG  120
DQLTLSFQGQ VYVFDSVSPE KVQAVLLLLG GREIPPTMPA MPVSPNHNNR GYTGTPQKFS  180
VPQRLASLIR FREKRKERNY DKKIRYTVRK EVALRMQRNK GQFTSSKSNN DESASNATNW  240
GMDENWTADN SGSQQQDIVC RHCGISEKST PMMRRGPEGP RTLCNACGLM WANKSFV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.140080.0cotyledon| hypocotyl| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G221800.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-126AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014634655.10.0GATA transcription factor 28 isoform X3
RefseqXP_028244718.10.0GATA transcription factor 28-like isoform X3
SwissprotQ8H1G01e-122GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A445JIE60.0A0A445JIE6_GLYSO; GATA transcription factor 28 isoform C
STRINGGLYMA08G23720.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-116ZIM-LIKE 2