PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.08G221800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GATA | ||||||||
Protein Properties | Length: 335aa MW: 36687 Da PI: 7.0385 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 50.9 | 2.1e-16 | 260 | 295 | 1 | 34 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 C++Cg ++ Tp++Rrgp+g++tLCnaCGl+++ kg Glyma.08G221800.1.p 260 CRHCGISEksTPMMRRGPEGPRTLCNACGLMWANKG 295 *****99999**********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 33 | No hit | No description |
PROSITE profile | PS51320 | 14.532 | 116 | 151 | IPR010399 | Tify domain |
SMART | SM00979 | 2.8E-11 | 116 | 151 | IPR010399 | Tify domain |
Pfam | PF06200 | 1.8E-12 | 121 | 150 | IPR010399 | Tify domain |
Pfam | PF06203 | 3.2E-15 | 184 | 226 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 12.927 | 184 | 226 | IPR010402 | CCT domain |
SMART | SM00401 | 3.4E-13 | 254 | 307 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 9.526 | 254 | 313 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.57E-12 | 255 | 307 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 6.5E-16 | 258 | 301 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.71E-13 | 259 | 315 | No hit | No description |
Pfam | PF00320 | 2.4E-14 | 260 | 295 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 260 | 287 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MLSLKCFKCL QSLFVLSVAK GGFPCCWCFG SSCIMDGIHG GDSRIHITDG QHPIHVPYVQ 60 EHEHHGLHHI SNGNGIDDDH NDGGDTNCGG SESMEGEVPS NHGNLPDNHA VMMDQGGDSG 120 DQLTLSFQGQ VYVFDSVSPE KVQAVLLLLG GREIPPTMPA MPVSPNHNNR GYTGTPQKFS 180 VPQRLASLIR FREKRKERNY DKKIRYTVRK EVALRMQRNK GQFTSSKSNN DESASNATNW 240 GMDENWTADN SGSQQQDIVC RHCGISEKST PMMRRGPEGP RTLCNACGLM WANKGILRDL 300 SRAAPLSGTI KNENKSLEAN QIVHRVAGEA DDSS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.14008 | 0.0 | cotyledon| hypocotyl| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00198 | DAP | Transfer from AT1G51600 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.08G221800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 1e-126 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006585660.1 | 0.0 | GATA transcription factor 28 isoform X1 | ||||
Refseq | XP_028244716.1 | 0.0 | GATA transcription factor 28-like isoform X1 | ||||
Swissprot | Q8H1G0 | 1e-130 | GAT28_ARATH; GATA transcription factor 28 | ||||
TrEMBL | A0A445JIJ1 | 0.0 | A0A445JIJ1_GLYSO; GATA transcription factor 28 isoform A | ||||
STRING | GLYMA08G23720.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13651 | 23 | 25 | Representative plant | OGRP831 | 16 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51600.2 | 1e-124 | ZIM-LIKE 2 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.08G221800.1.p |