PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.08G218600.1.p | ||||||||
Common Name | GLYMA_08G218600, WRKY56 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 314aa MW: 34609.8 Da PI: 8.7531 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.3 | 9e-30 | 160 | 219 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ +++++pr+Y++C++a +Cpvkkkv+rs +d +v+ tYegeHnh+ Glyma.08G218600.1.p 160 VKDGYQWRKYGQKVTRDNPYPRAYFKCSFApSCPVKKKVQRSVDDHSVLLATYEGEHNHP 219 58***************************99****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.3E-29 | 150 | 220 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 25.649 | 155 | 221 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-25 | 156 | 220 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-34 | 160 | 220 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.8E-24 | 161 | 219 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0002237 | Biological Process | response to molecule of bacterial origin | ||||
GO:0002238 | Biological Process | response to molecule of fungal origin | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009623 | Biological Process | response to parasitic fungus | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0050691 | Biological Process | regulation of defense response to virus by host | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:1990841 | Molecular Function | promoter-specific chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MDCSSWINTS LDLSINPRRV HEEAVPKVVE SKLFSLGMPK FNVEEESTSD LEEELKRVSA 60 ENKKLAEMLS VVCENYNTLR SHLMEYMRKN GEKEVSPTSK KRKSESSNNN NSNLMGTNNG 120 NSESSSTDEE SCKKPREETI KAKISRVYVR TESSDTSLIV KDGYQWRKYG QKVTRDNPYP 180 RAYFKCSFAP SCPVKKKVQR SVDDHSVLLA TYEGEHNHPQ ASSQMEATSG SGRSVTLGSV 240 PCSASLSTST PTLVTLDLTK SKGSNDSKST KPKGDSPKVP QVLVEQMATS LTTDPNFRAA 300 LVAAISGRLL HNN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 9e-21 | 145 | 218 | 1 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.31966 | 0.0 | cotyledon| flower| hypocotyl| leaf| meristem| root| seed coat| somatic embryo | ||||
Gma.35612 | 0.0 | flower| meristem| root| seed coat |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00251 | DAP | Transfer from AT1G80840 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.08G218600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU375348 | 0.0 | EU375348.1 Glycine max transcription factor (WRKY56) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001237558.1 | 0.0 | WRKY transcription factor 56 | ||||
Refseq | XP_028244681.1 | 0.0 | probable WRKY transcription factor 40 isoform X1 | ||||
Swissprot | Q9SAH7 | 7e-96 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | A0A445JIB1 | 0.0 | A0A445JIB1_GLYSO; WRKY transcription factor 40 | ||||
TrEMBL | B0LUR7 | 0.0 | B0LUR7_SOYBN; Transcription factor | ||||
STRING | GLYMA08G23380.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF973 | 34 | 115 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 5e-82 | WRKY DNA-binding protein 40 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.08G218600.1.p |
Entrez Gene | 100170678 |