PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G216600.1.p
Common NameGLYMA_08G216600, LOC100527365
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 196aa    MW: 22112.8 Da    PI: 7.3029
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G216600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-18754253
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53
                         +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ +
  Glyma.08G216600.1.p  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLM 54
                         69******9.**********8.....334*********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.45E-34666No hitNo description
SMARTSM003806.0E-41770IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-34764IPR001471AP2/ERF domain
SuperFamilySSF541716.47E-21766IPR016177DNA-binding domain
PfamPF008472.4E-11756IPR001471AP2/ERF domain
PROSITE profilePS5103221.061764IPR001471AP2/ERF domain
PRINTSPR003673.2E-11819IPR001471AP2/ERF domain
PRINTSPR003673.2E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MARPQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCGSKAR  60
TNFPYNPNEP HSSSSKLLSA TLTAKLHKCH MASLSLQMAK QKPPQSKEPQ PSHGSSNPFA  120
FANVIAGSSA DTGFRWPDNR HEEFRWLEGN WVGVEGQVEV SHQQFQPVLE DDHIEQMIQE  180
LLDYGSIELC SVGLT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-17868667ATERF1
3gcc_A1e-17868667ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G216600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0922010.0BT092201.1 Soybean clone JCVI-FLGm-10G18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235035.11e-146uncharacterized protein LOC100527365
RefseqXP_028247076.11e-146ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW53e-71ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A445JI911e-145A0A445JI91_GLYSO; Ethylene-responsive transcription factor ERF003
TrEMBLC6T4401e-145C6T440_SOYBN; Uncharacterized protein
STRINGGLYMA08G23160.11e-146(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110634110
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.11e-50ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]