PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G204700.1.p
Common NameGLYMA_08G204700, LOC100789432
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 749aa    MW: 83710.9 Da    PI: 5.7262
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G204700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.24.5e-2193148156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +rk +++t+eq++e+e+lF+++++p++++r++L+++lgL  rqVk+WFqNrR++ k
  Glyma.08G204700.1.p  93 KRKYHRHTTEQIREMEALFKESPHPDEKQRQKLSQQLGLAPRQVKFWFQNRRTQIK 148
                          79999***********************************************9877 PP
2START227.15.1e-712644872206
                          HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS
                START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla.... 77 
                          +a++a++el+k+a+ +ep+Wv+s+    e++n+de++++ + +++        +ea+r++ vv+m+l++l++++ld++ qW+e+++    
  Glyma.08G204700.1.p 264 VANRATEELIKMATMGEPLWVRSVetgrEILNYDEYVKEMAAENSgserpkTFIEASRETEVVFMDLPRLLQSFLDVN-QWKEMFPclis 352
                          6899************************************998889********************************.*********** PP

                          EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTC CS
                START  78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksng 160
                          ka t++vis+g      ga+qlm+aelq+l+p+vp R+++fvR+++ql++++w+ivdvS+d  +++  ++s+v+++++pSg++ie+ksng
  Glyma.08G204700.1.p 353 KAVTVDVISNGegsnrnGAVQLMFAELQMLTPMVPtREVYFVRCCKQLSDEQWAIVDVSIDKVEDNI-DASLVKCRKRPSGCIIEDKSNG 441
                          *****************************************************************98.9********************* PP

                          EEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 161 hskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          h+kv+wveh +++++++h ++r +v+sgla+ga++w atlq +ce+
  Glyma.08G204700.1.p 442 HCKVIWVEHLECQKSTIHTMYRTIVNSGLAFGARHWIATLQLHCER 487
                          ********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-2379144IPR009057Homeodomain-like
SuperFamilySSF466897.7E-2180151IPR009057Homeodomain-like
PROSITE profilePS5007118.23690150IPR001356Homeobox domain
SMARTSM003892.4E-1892154IPR001356Homeobox domain
PfamPF000462.8E-1893148IPR001356Homeobox domain
CDDcd000865.57E-1797148No hitNo description
PROSITE patternPS000270125148IPR017970Homeobox, conserved site
PROSITE profilePS5084839.403254490IPR002913START domain
SuperFamilySSF559619.75E-33256487No hitNo description
CDDcd088751.20E-109258486No hitNo description
SMARTSM002342.9E-73263487IPR002913START domain
PfamPF018525.4E-57264487IPR002913START domain
Gene3DG3DSA:3.30.530.206.6E-6360487IPR023393START-like domain
SuperFamilySSF559612.61E-12517737No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 749 aa     Download sequence    Send to blast
MGVNMSNTPP HTKDLFSSPV LSLSLAGIFR YAGEAAETSG MEMASDEVRQ EDTADISSDN  60
SGPVRSRSEE DFDCDDVHDG DDKDNDDKNR KKKRKYHRHT TEQIREMEAL FKESPHPDEK  120
QRQKLSQQLG LAPRQVKFWF QNRRTQIKAL QERHENSLLK TELDKLREET KAMRETINKS  180
CCPNCGMVTA TIDASMSTEE KQLLIENAKL KAEVEKLRTA LGKFSPRTTS PTTSSAGHDE  240
EENRNSLGFY SVLFGLDKSR IMDVANRATE ELIKMATMGE PLWVRSVETG REILNYDEYV  300
KEMAAENSGS ERPKTFIEAS RETEVVFMDL PRLLQSFLDV NQWKEMFPCL ISKAVTVDVI  360
SNGEGSNRNG AVQLMFAELQ MLTPMVPTRE VYFVRCCKQL SDEQWAIVDV SIDKVEDNID  420
ASLVKCRKRP SGCIIEDKSN GHCKVIWVEH LECQKSTIHT MYRTIVNSGL AFGARHWIAT  480
LQLHCERLVF YMATNVPMKD STGVATLAGR KSILKLAQRM TWSFCHAIGA SSFHTWTMVT  540
SKTGEDIRIS SRKNLNDPGE PLGVILSAVS SVWLPVSTNV LFDFLRDEAR RSEWDIMSSG  600
GSVQSVANLA KGKDRGNVVN IQKIQSKDNS VWILQDSCTS AYESMVVYAP VEFAGIQSVL  660
TGCDSSNLAI LPSGFSILPD GIEGRPLVIS SRQEEKYTEG GSLFTMAFQI LVNPSPTVKL  720
TTESVESVNN LVSCTLRNIK TSLQCEDG*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing trichomes.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G204700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311640.0KT031164.1 Glycine max clone HN_CCL_123 homeodomain/HOMEOBOX transcription factor (Glyma07g02220.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003533048.10.0homeobox-leucine zipper protein GLABRA 2 isoform X1
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLI1KV670.0I1KV67_SOYBN; Uncharacterized protein
STRINGGLYMA08G21890.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47143352
Representative plantOGRP9080913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]