PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.08G202000.3.p | ||||||||
Common Name | GLYMA_08G202000, LOC100800697 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 844aa MW: 93335.7 Da PI: 6.6007 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 53.7 | 3.5e-17 | 19 | 77 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++ +++ps +r +L +++ +++ +q+kvWFqNrR +ek+ Glyma.08G202000.3.p 19 KYVRYTPEQVEALERLYHDCPKPSSIRRLQLIRECptlsHIDPKQIKVWFQNRRCREKQ 77 5679*****************************************************97 PP | |||||||
2 | bZIP_1 | 20 | 1.5e-06 | 71 | 114 | 18 | 61 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 rr+R++ ++e +L+ +L+a Nk L +e+++l+k+v++l Glyma.08G202000.3.p 71 RRCREKQRKESSRLQAVNRKLTAMNKLLMEEIDRLQKQVSQLVY 114 9***************************************9965 PP | |||||||
3 | START | 176.1 | 2.1e-55 | 166 | 374 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+d++ W ++++++++l+v+ ++ g Glyma.08G202000.3.p 166 IAEETLEEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCNGVAARACGLVGLEPT-RVAEILKDRPLWFRDCRAVDVLNVLPTAngG 254 7899******************************************************.8888888888****************9999* PP EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS START 90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175 +++l +++l+a+++l+p Rdf+ +Ry+ l++ ++vi+++S+ ++q+ p+ +++vRae+lpSg+li+p+++g+s +++v+h++l+ + Glyma.08G202000.3.p 255 TIELLYMQLYAPTTLAPaRDFWLLRYTSVLEDSSLVICERSLKNTQNGPSmppVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMNLEPW 344 ************************************************9988899*********************************** PP XXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 176 lphwllrslvksglaegaktwvatlqrqce 205 +++++lr+l++s+ + +kt++a+l+++++ Glyma.08G202000.3.p 345 SVPEVLRPLYESSKVLSQKTTMAALRHLRQ 374 *************************99876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.078 | 14 | 78 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.4E-14 | 16 | 82 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.7E-17 | 18 | 80 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.51E-15 | 19 | 79 | No hit | No description |
Pfam | PF00046 | 7.9E-15 | 20 | 77 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.0E-17 | 21 | 77 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 5.41E-6 | 71 | 110 | No hit | No description |
PROSITE profile | PS50848 | 24.505 | 156 | 384 | IPR002913 | START domain |
CDD | cd08875 | 2.84E-78 | 160 | 375 | No hit | No description |
SuperFamily | SSF55961 | 5.63E-37 | 165 | 375 | No hit | No description |
SMART | SM00234 | 3.7E-40 | 165 | 375 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 8.7E-21 | 165 | 371 | IPR023393 | START-like domain |
Pfam | PF01852 | 7.5E-53 | 166 | 374 | IPR002913 | START domain |
Pfam | PF08670 | 3.1E-51 | 700 | 842 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 844 aa Download sequence Send to blast |
MSCKDGSRNG IGIGMDNGKY VRYTPEQVEA LERLYHDCPK PSSIRRLQLI RECPTLSHID 60 PKQIKVWFQN RRCREKQRKE SSRLQAVNRK LTAMNKLLME EIDRLQKQVS QLVYENGYFR 120 QHTTQNTKQQ AIKDTSCESA VRSGQQHNLI TQHPPRDASP AGLLSIAEET LEEFLSKATG 180 TAVEWVQMPG MKPGPDSIGI VAISHGCNGV AARACGLVGL EPTRVAEILK DRPLWFRDCR 240 AVDVLNVLPT ANGGTIELLY MQLYAPTTLA PARDFWLLRY TSVLEDSSLV ICERSLKNTQ 300 NGPSMPPVQH FVRAEMLPSG YLIRPCEGGG SIIHIVDHMN LEPWSVPEVL RPLYESSKVL 360 SQKTTMAALR HLRQISHEVS PSNVSGWGRR PSALRALSQR LSRGFNEALN GFTDEGWTTI 420 GNDGVDDVTI LVNSSPDKLM GLNLSFANGF PSVSNAVLCA KASMLLQNVH PAILLRFLRE 480 HRSEWADNNM DAYTAAAIKV GPCSFSGSRV GNYGGQVILP LAHTIEHEEF LEVIKLEGVA 540 HSPDDTIMPR EMFLLQLCSG MDENAVGTCA ELISAPIDAS FADDAPLLPS GFRIIPLESG 600 KEASSPNRTL DLASSLDVGP SGNRASDECA GNSSYMRSVM TIAFEFAFES HMQEHVAAMA 660 RQYVRSIISS VQRVGLALSP SHLSSHAGLR SPLGTPEAQT LAHWICNSYR CYLGVELLKS 720 NNEGNESLLK SLWHHSDAIL CCTLKALPVF TFSNQAGLDM LETTLVALQD IPLEKIFDDH 780 ERKILFSEFP QIIQQGFACL QGGICLSSMG RPVSYERVVA WKVLNEEENA HCICFMFMNW 840 SFV* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.62616 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed the developing vascular elements and the adaxial portion of cotyledons. Expressed in developing ovules, stamens and carpels. Expressed in procambium and shoot meristem. {ECO:0000269|PubMed:14701930, ECO:0000269|PubMed:15705957}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.08G202000.3.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003531653.1 | 0.0 | homeobox-leucine zipper protein ATHB-15 isoform X2 | ||||
Refseq | XP_028244499.1 | 0.0 | homeobox-leucine zipper protein ATHB-15-like isoform X2 | ||||
Swissprot | Q9ZU11 | 0.0 | ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15 | ||||
TrEMBL | I1KV33 | 0.0 | I1KV33_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA08G21620.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G52150.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.08G202000.3.p |
Entrez Gene | 100800697 |
Publications ? help Back to Top | |||
---|---|---|---|
|