PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G202000.1.p
Common NameGLYMA_08G202000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 851aa    MW: 94098.6 Da    PI: 6.6659
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G202000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.73.5e-171977357
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         k  ++t+eq+e+Le+l++ +++ps  +r +L +++    +++ +q+kvWFqNrR +ek+
  Glyma.08G202000.1.p 19 KYVRYTPEQVEALERLYHDCPKPSSIRRLQLIRECptlsHIDPKQIKVWFQNRRCREKQ 77
                         5679*****************************************************97 PP
2bZIP_1201.5e-06711141861
                          HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1  18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                          rr+R++ ++e  +L+    +L+a Nk L +e+++l+k+v++l  
  Glyma.08G202000.1.p  71 RRCREKQRKESSRLQAVNRKLTAMNKLLMEEIDRLQKQVSQLVY 114
                          9***************************************9965 PP
3START176.12.1e-551663742205
                          HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS
                START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 
                          +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v+ ++  g
  Glyma.08G202000.1.p 166 IAEETLEEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCNGVAARACGLVGLEPT-RVAEILKDRPLWFRDCRAVDVLNVLPTAngG 254
                          7899******************************************************.8888888888****************9999* PP

                          EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
                START  90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                          +++l +++l+a+++l+p Rdf+ +Ry+  l++ ++vi+++S+ ++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h++l+ +
  Glyma.08G202000.1.p 255 TIELLYMQLYAPTTLAPaRDFWLLRYTSVLEDSSLVICERSLKNTQNGPSmppVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMNLEPW 344
                          ************************************************9988899*********************************** PP

                          XXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                START 176 lphwllrslvksglaegaktwvatlqrqce 205
                          +++++lr+l++s+ +  +kt++a+l+++++
  Glyma.08G202000.1.p 345 SVPEVLRPLYESSKVLSQKTTMAALRHLRQ 374
                          *************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.0781478IPR001356Homeobox domain
SMARTSM003892.4E-141682IPR001356Homeobox domain
SuperFamilySSF466898.13E-171880IPR009057Homeodomain-like
CDDcd000861.53E-151979No hitNo description
PfamPF000468.0E-152077IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.1E-172177IPR009057Homeodomain-like
CDDcd146865.17E-671110No hitNo description
PROSITE profilePS5084824.505156384IPR002913START domain
CDDcd088752.66E-78160375No hitNo description
SuperFamilySSF559615.63E-37165375No hitNo description
SMARTSM002343.7E-40165375IPR002913START domain
Gene3DG3DSA:3.30.530.208.8E-21165371IPR023393START-like domain
PfamPF018527.6E-53166374IPR002913START domain
PfamPF086703.2E-51707849IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 851 aa     Download sequence    Send to blast
MSCKDGSRNG IGIGMDNGKY VRYTPEQVEA LERLYHDCPK PSSIRRLQLI RECPTLSHID  60
PKQIKVWFQN RRCREKQRKE SSRLQAVNRK LTAMNKLLME EIDRLQKQVS QLVYENGYFR  120
QHTTQNTKQQ AIKDTSCESA VRSGQQHNLI TQHPPRDASP AGLLSIAEET LEEFLSKATG  180
TAVEWVQMPG MKPGPDSIGI VAISHGCNGV AARACGLVGL EPTRVAEILK DRPLWFRDCR  240
AVDVLNVLPT ANGGTIELLY MQLYAPTTLA PARDFWLLRY TSVLEDSSLV ICERSLKNTQ  300
NGPSMPPVQH FVRAEMLPSG YLIRPCEGGG SIIHIVDHMN LEPWSVPEVL RPLYESSKVL  360
SQKTTMAALR HLRQISHEVS PSNVSGWGRR PSALRALSQR LSRLIYSTKG GFNEALNGFT  420
DEGWTTIGND GVDDVTILVN SSPDKLMGLN LSFANGFPSV SNAVLCAKAS MLLQNVHPAI  480
LLRFLREHRS EWADNNMDAY TAAAIKVGPC SFSGSRVGNY GGQVILPLAH TIEHEEFLEV  540
IKLEGVAHSP DDTIMPREMF LLQLCSGMDE NAVGTCAELI SAPIDASFAD DAPLLPSGFR  600
IIPLESGKEA SSPNRTLDLA SSLDVGPSGN RASDECAGNS SYMRSVMTIA FEFAFESHMQ  660
EHVAAMARQY VRSIISSVQR VGLALSPSHL SSHAGLRSPL GTPEAQTLAH WICNSYRCYL  720
GVELLKSNNE GNESLLKSLW HHSDAILCCT LKALPVFTFS NQAGLDMLET TLVALQDIPL  780
EKIFDDHERK ILFSEFPQII QQGFACLQGG ICLSSMGRPV SYERVVAWKV LNEEENAHCI  840
CFMFMNWSFV *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.626160.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed the developing vascular elements and the adaxial portion of cotyledons. Expressed in developing ovules, stamens and carpels. Expressed in procambium and shoot meristem. {ECO:0000269|PubMed:14701930, ECO:0000269|PubMed:15705957}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G202000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028244498.10.0homeobox-leucine zipper protein ATHB-15-like isoform X1
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A0R0IXB30.0A0A0R0IXB3_SOYBN; Uncharacterized protein
STRINGGLYMA08G21620.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Representative plantOGRP6511671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]