PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G201900.2.p
Common NameGLYMA_08G201900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 827aa    MW: 91180.2 Da    PI: 6.4002
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G201900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72e-18563357
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Glyma.08G201900.2.p  5 KYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 63
                         5679*****************************************************97 PP
2START181.64.6e-571493572205
                          HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS
                START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 
                          +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v+ ++  g
  Glyma.08G201900.2.p 149 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRPLWFRDCRAVDVLNVLPTAngG 237
                          7899******************************************************.8888888888****************9999* PP

                          EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
                START  90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                          +++l +++l+a+++l+p Rdf+ +Ry+  l++g++vi+++S+ ++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+ +
  Glyma.08G201900.2.p 238 TIELLYMQLYAPTTLAPaRDFWLLRYTSVLEDGSLVICERSLKNTQNGPSmppVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPW 327
                          ************************************************9988899*********************************** PP

                          XXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                START 176 lphwllrslvksglaegaktwvatlqrqce 205
                          +++++lr+l++s+++ ++kt++a+l+++++
  Glyma.08G201900.2.p 328 SVPEVLRPLYESSTVLAQKTTMAALRHLRQ 357
                          *************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.613164IPR001356Homeobox domain
SMARTSM003891.1E-15268IPR001356Homeobox domain
CDDcd000861.28E-16565No hitNo description
SuperFamilySSF466892.35E-16566IPR009057Homeodomain-like
PfamPF000465.7E-16663IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.4E-18763IPR009057Homeodomain-like
CDDcd146862.33E-65796No hitNo description
PROSITE profilePS5084825.069139353IPR002913START domain
CDDcd088753.39E-81143358No hitNo description
SMARTSM002349.3E-43148358IPR002913START domain
SuperFamilySSF559611.02E-38148358No hitNo description
Gene3DG3DSA:3.30.530.202.9E-23148354IPR023393START-like domain
PfamPF018521.2E-54149357IPR002913START domain
SuperFamilySSF559612.31E-5385479No hitNo description
SuperFamilySSF559612.31E-5509584No hitNo description
PfamPF086703.3E-50683825IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 827 aa     Download sequence    Send to blast
MDNGKYVRYT PEQVEALERL YHDCPKPSSI RRQQLIRECP ILSNIEPKQI KVWFQNRRCR  60
EKQRKESSRL QAVNRKLTAM NKLLMEENDR LQKQVSQLVY ENGYFRQHTQ ITTQATKDTN  120
CESVVTSGQH NLTTQHPPRD ASPAGLLSIA EETLAEFLSK ATGTAVEWVQ MPGMKPGPDS  180
IGIVAISHGC TGVAARACGL VGLEPTRVAE ILKDRPLWFR DCRAVDVLNV LPTANGGTIE  240
LLYMQLYAPT TLAPARDFWL LRYTSVLEDG SLVICERSLK NTQNGPSMPP VQHFVRAEML  300
PSGYLIRPCE GGGSIIHIVD HMDLEPWSVP EVLRPLYESS TVLAQKTTMA ALRHLRQISH  360
EVSQSNVTGW GRRPAALRAL SQRLSRGFNE ALNGFTDEGW TTISNDGVDD VTILVNSSPD  420
KLMGLNLSFA NGFPSVSNAV LCAKASMLLQ NVPPAILLRF LREHRSEWAD NNMDAYTAAA  480
IKVGPCSLSG SCVGNFGGQV ILPLAHTIEH EEFLEVIKLE GIAHSPEDTI MPREMFLLQL  540
CSGMDENAVG TCAELISAPI DASFADDAPL LPSGFRIIPL ESGKEASSPN RTLDLASSLD  600
VGPSGNRASN GSAGNSSCMR SVMTIAFEFA FESHMQEHVT SMARQYVRSI ISSVQRVALA  660
LSPSHLSSHA GLRSPLGTPE AQTLAHWICN SYRCYLGVEL LKSNNEGNES LLKSLWHHSD  720
AILCCTLKAL PVFTFSNQAG LDMLETTLVA LQDITLEKIF DDHGRKILFS EFPQIIQQGF  780
ACLQGGICLS SMGRPVSYER VVAWKVLNEE ENAHCICFMF VNWSFV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.74620.0hypocotyl| meristem| seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed the developing vascular elements and the adaxial portion of cotyledons. Expressed in developing ovules, stamens and carpels. Expressed in procambium and shoot meristem. {ECO:0000269|PubMed:14701930, ECO:0000269|PubMed:15705957}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G201900.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003531652.10.0homeobox-leucine zipper protein ATHB-15
RefseqXP_028244497.10.0homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A0R0IPU80.0A0A0R0IPU8_SOYBN; Uncharacterized protein
TrEMBLA0A445JHH80.0A0A445JHH8_GLYSO; Homeobox-leucine zipper protein ATHB-15 isoform B
STRINGGLYMA08G21610.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]