PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G201900.1.p
Common NameGLYMA_08G201900, LOC100800165
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 839aa    MW: 92386.6 Da    PI: 6.469
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G201900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72.1e-181775357
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Glyma.08G201900.1.p 17 KYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75
                         5679*****************************************************97 PP
2START181.54.7e-571613692205
                          HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS
                START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 
                          +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v+ ++  g
  Glyma.08G201900.1.p 161 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRPLWFRDCRAVDVLNVLPTAngG 249
                          7899******************************************************.8888888888****************9999* PP

                          EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
                START  90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                          +++l +++l+a+++l+p Rdf+ +Ry+  l++g++vi+++S+ ++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+ +
  Glyma.08G201900.1.p 250 TIELLYMQLYAPTTLAPaRDFWLLRYTSVLEDGSLVICERSLKNTQNGPSmppVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPW 339
                          ************************************************9988899*********************************** PP

                          XXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                START 176 lphwllrslvksglaegaktwvatlqrqce 205
                          +++++lr+l++s+++ ++kt++a+l+++++
  Glyma.08G201900.1.p 340 SVPEVLRPLYESSTVLAQKTTMAALRHLRQ 369
                          *************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.5641276IPR001356Homeobox domain
SMARTSM003891.1E-151480IPR001356Homeobox domain
SuperFamilySSF466891.41E-161678IPR009057Homeodomain-like
CDDcd000861.31E-161777No hitNo description
PfamPF000465.8E-161875IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-181975IPR009057Homeodomain-like
CDDcd146862.37E-669108No hitNo description
PROSITE profilePS5084825.069151365IPR002913START domain
CDDcd088753.80E-81155370No hitNo description
SMARTSM002349.3E-43160370IPR002913START domain
SuperFamilySSF559611.04E-38160370No hitNo description
Gene3DG3DSA:3.30.530.203.0E-23160366IPR023393START-like domain
PfamPF018521.3E-54161369IPR002913START domain
SuperFamilySSF559612.31E-5397491No hitNo description
SuperFamilySSF559612.31E-5521596No hitNo description
PfamPF086703.4E-50695837IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    Send to blast
MSCKDGSRNG IGMDNGKYVR YTPEQVEALE RLYHDCPKPS SIRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKESS RLQAVNRKLT AMNKLLMEEN DRLQKQVSQL VYENGYFRQH  120
TQITTQATKD TNCESVVTSG QHNLTTQHPP RDASPAGLLS IAEETLAEFL SKATGTAVEW  180
VQMPGMKPGP DSIGIVAISH GCTGVAARAC GLVGLEPTRV AEILKDRPLW FRDCRAVDVL  240
NVLPTANGGT IELLYMQLYA PTTLAPARDF WLLRYTSVLE DGSLVICERS LKNTQNGPSM  300
PPVQHFVRAE MLPSGYLIRP CEGGGSIIHI VDHMDLEPWS VPEVLRPLYE SSTVLAQKTT  360
MAALRHLRQI SHEVSQSNVT GWGRRPAALR ALSQRLSRGF NEALNGFTDE GWTTISNDGV  420
DDVTILVNSS PDKLMGLNLS FANGFPSVSN AVLCAKASML LQNVPPAILL RFLREHRSEW  480
ADNNMDAYTA AAIKVGPCSL SGSCVGNFGG QVILPLAHTI EHEEFLEVIK LEGIAHSPED  540
TIMPREMFLL QLCSGMDENA VGTCAELISA PIDASFADDA PLLPSGFRII PLESGKEASS  600
PNRTLDLASS LDVGPSGNRA SNGSAGNSSC MRSVMTIAFE FAFESHMQEH VTSMARQYVR  660
SIISSVQRVA LALSPSHLSS HAGLRSPLGT PEAQTLAHWI CNSYRCYLGV ELLKSNNEGN  720
ESLLKSLWHH SDAILCCTLK ALPVFTFSNQ AGLDMLETTL VALQDITLEK IFDDHGRKIL  780
FSEFPQIIQQ GFACLQGGIC LSSMGRPVSY ERVVAWKVLN EEENAHCICF MFVNWSFV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.74620.0hypocotyl| meristem| seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed the developing vascular elements and the adaxial portion of cotyledons. Expressed in developing ovules, stamens and carpels. Expressed in procambium and shoot meristem. {ECO:0000269|PubMed:14701930, ECO:0000269|PubMed:15705957}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G201900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003531652.10.0homeobox-leucine zipper protein ATHB-15
RefseqXP_028244497.10.0homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A445JHH90.0A0A445JHH9_GLYSO; Homeobox-leucine zipper protein ATHB-15 isoform A
TrEMBLI1KV320.0I1KV32_SOYBN; Uncharacterized protein
STRINGGLYMA08G21610.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Representative plantOGRP6511671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]