PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G192600.1.p
Common NameGLYMA_08G192600, LOC100809421
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 326aa    MW: 36570.5 Da    PI: 5.3217
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G192600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.85e-40411401100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          aCaaCk++rrkCa+dC+lapyfp+e++++f n+hklFG+sn++k++k l+++++++am++++y++++ra dPv G+++ il+lq q+e  
  Glyma.08G192600.1.p  41 ACAACKYQRRKCAPDCILAPYFPHERQRQFLNAHKLFGVSNITKIIKLLSPQDKDQAMRTIIYQSDMRATDPVGGCYRYILDLQAQIEYY 130
                          7***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          +ael+l+ ++
  Glyma.08G192600.1.p 131 RAELELVLQQ 140
                          ****998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.97240141IPR004883Lateral organ boundaries, LOB
PfamPF031952.7E-3741137IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MQPKSHTPFF VPPQKAMNNN NPNNNSNRIS SPRNGNSTTQ ACAACKYQRR KCAPDCILAP  60
YFPHERQRQF LNAHKLFGVS NITKIIKLLS PQDKDQAMRT IIYQSDMRAT DPVGGCYRYI  120
LDLQAQIEYY RAELELVLQQ LAIFRAQAQQ QQQQQQQQHG IYAPNNVNIA VNGDGEVLNA  180
DPMGLYDQQQ HYQCLQPQQQ EQYAMMHENG HGSQNSDGTA FQEQINTWAV QNTAVSLSSL  240
SLQGQGSNVS DGYDHKPVLG IDMDSDERSE LGFESEELVH RSDEAVLFKI DDAEIKAEAD  300
HCMQQAQDHD LKGAATSFTL TNCTC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-254213512105LOB family transfactor Ramosa2.1
5ly0_B2e-254213512105LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G192600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003533008.20.0LOB domain-containing protein 22 isoform X1
TrEMBLK7L7L80.0K7L7L8_SOYBN; Uncharacterized protein
STRINGGLYMA08G20550.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41333259
Representative plantOGRP55241021
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.12e-55LOB domain-containing protein 22