PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G191500.1.p
Common NameGLYMA_08G191500, LOC102665409
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 350aa    MW: 39208.2 Da    PI: 6.2208
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G191500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.65.9e-181461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg W++eEde+l+++++ +G g+W+++++  g+ R++k+c++rw +yl
  Glyma.08G191500.1.p 14 RGLWSPEEDEKLINYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                         788*******************************************97 PP
2Myb_DNA-binding45.22.2e-1467109145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          rg+++++E  l+++++  lG++ W+ Ia++++ gRt++++k++w+
  Glyma.08G191500.1.p  67 RGSFSPQEAALIIELHCILGNR-WAQIAKHLP-GRTDNEVKNFWN 109
                          899*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-27664IPR009057Homeodomain-like
PROSITE profilePS5129424.506965IPR017930Myb domain
SuperFamilySSF466893.71E-2911108IPR009057Homeodomain-like
SMARTSM007172.0E-131363IPR001005SANT/Myb domain
PfamPF002491.0E-151461IPR001005SANT/Myb domain
CDDcd001674.89E-121761No hitNo description
Gene3DG3DSA:1.10.10.602.2E-2465116IPR009057Homeodomain-like
PROSITE profilePS5129419.19766116IPR017930Myb domain
SMARTSM007178.3E-1466114IPR001005SANT/Myb domain
PfamPF002493.6E-1367110IPR001005SANT/Myb domain
CDDcd001674.33E-1069109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGHHSCCNKQ KVKRGLWSPE EDEKLINYIT TYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SPQEAALIIE LHCILGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLLSRD  120
VNIPPLATFS DFHSPGFNVG TMESLFPFTA NPNVILNFHH HADQLYLPTT PISPILEGFD  180
HINNDVKLGI DSNYNANNFL HIQNPTPEIV LPLSSNNPSS YEDTWSLGCV ALHLNPNQEN  240
DQIIKSDDTT LHYVVDKFFN PMALLQHYEG QLVEPIVPKV SDIEDYVCSI QEHEATTAKF  300
QCYSQDLTVA SNQLEYIDAF MSSLPSSTTS SAASSSQIVP NPIPSGWES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-31141167108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G191500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1369555e-82AC136955.20 Medicago truncatula clone mth2-10p1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006585515.10.0transcription factor MYB26
RefseqXP_028247311.10.0transcription factor MYB26-like
TrEMBLA0A445JH170.0A0A445JH17_GLYSO; Transcription factor MYB26
TrEMBLK7L7K80.0K7L7K8_SOYBN; Uncharacterized protein
STRINGGLYMA08G20440.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30143168
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.25e-81myb domain protein 26