PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.08G184500.1.p | ||||||||
Common Name | GLYMA_08G184500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GATA | ||||||||
Protein Properties | Length: 179aa MW: 19860.5 Da PI: 9.1449 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 29.3 | 1.2e-09 | 1 | 27 | 9 | 35 |
GATA 9 TplWRrgpdgnktLCnaCGlyyrkkgl 35 TplW +gp ++ LCnaCG +y+ +g+ Glyma.08G184500.1.p 1 TPLWPNGPADKPVLCNACGSRYKTRGH 27 9*******77777**********9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00202 | 1.14E-8 | 1 | 27 | No hit | No description |
SuperFamily | SSF57716 | 4.7E-5 | 1 | 39 | No hit | No description |
Pfam | PF00320 | 2.2E-7 | 1 | 27 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 5.8E-7 | 1 | 27 | IPR013088 | Zinc finger, NHR/GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
TPLWPNGPAD KPVLCNACGS RYKTRGHLDN YLPKNVHPQP HHKKFKNVNS GGSNLNVEPE 60 LESGNQLLNH VSPRSTTNGD SDKLTLDVHH ISPQDFGKKI PSKKRSPMVY KRMIPMEKFQ 120 KQLVKLYKSE RQPEESVLVD NMMNFIPENE IGLGTILLKT NDDDASSTDK CGSSTSAP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.08G184500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235453 | 7e-49 | AC235453.1 Glycine max strain Williams 82 clone GM_WBb0167A12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028246641.1 | 1e-130 | GATA transcription factor 26-like | ||||
TrEMBL | A0A445JGG9 | 1e-129 | A0A445JGG9_GLYSO; GATA transcription factor 26 (Fragment) | ||||
TrEMBL | K7L7H0 | 1e-129 | K7L7H0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA08G19681.1 | 1e-130 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12747 | 10 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.1 | 3e-14 | GATA transcription factor 26 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.08G184500.1.p |