PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.08G183600.1.p | ||||||||
Common Name | GLYMA_08G183600, LOC100101878 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bZIP | ||||||||
Protein Properties | Length: 161aa MW: 18456 Da PI: 9.6792 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 47 | 5.7e-15 | 79 | 126 | 4 | 50 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk.ele 50 l+++rr++kNRe+A rsR+RK+a++ eLe v Le+eN L k e++ Glyma.08G183600.1.p 79 LQKQRRMIKNRESAARSRERKQAYTVELESLVTHLEEENAILLKqEAD 126 89*************************************987541555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.0E-11 | 76 | 138 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.277 | 78 | 130 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.7E-13 | 78 | 127 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 1.59E-16 | 80 | 123 | No hit | No description |
SuperFamily | SSF57959 | 5.31E-11 | 80 | 130 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 6.3E-14 | 81 | 135 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 83 | 98 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MASSKVATTT TTTTNSDISS QQVWDGATME MESQDNMNMS MSLQDLLTEN DAVPPSHSHG 60 RGKRKTLVEE PLVVDKVTLQ KQRRMIKNRE SAARSRERKQ AYTVELESLV THLEEENAIL 120 LKQEADRKRQ RFNQLMECLI PVEEKRKPKP MLRRVNSSQW * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.35494 | 0.0 | root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.08G183600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT092284 | 9e-45 | BT092284.1 Soybean clone JCVI-FLGm-10F13 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001345673.1 | 1e-115 | transcription factor bZIP81 | ||||
Refseq | XP_028244266.1 | 1e-115 | G-box-binding factor 4-like | ||||
Swissprot | P42777 | 6e-26 | GBF4_ARATH; G-box-binding factor 4 | ||||
TrEMBL | A0A0R0IVB6 | 1e-114 | A0A0R0IVB6_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445JGF9 | 1e-114 | A0A445JGF9_GLYSO; G-box-binding factor 4 isoform A | ||||
STRING | GLYMA08G19590.2 | 7e-83 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2028 | 34 | 81 | Representative plant | OGRP8662 | 7 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44080.1 | 7e-32 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.08G183600.1.p |
Entrez Gene | 100101878 |
Publications ? help Back to Top | |||
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