PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G178900.1.p
Common NameGLYMA_08G178900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CAMTA
Protein Properties Length: 1082aa    MW: 121609 Da    PI: 5.765
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G178900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1179.83.3e-56221364118
                 CG-1   4 ekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 
                           ++rwl++ ei++iL n++ +++t+e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLK+g+v+vl+cyYah+een++
  Glyma.08G178900.1.p  22 AQHRWLRPAEICEILRNYRMFHITSEPHNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKIGSVDVLHCYYAHGEENEN 111
                          49**************************************************************************************** PP

                 CG-1  94 fqrrcywlLeeelekivlvhylevk 118
                          fqrr+yw+Le ++ +iv+vhylevk
  Glyma.08G178900.1.p 112 FQRRSYWMLEPDMMHIVFVHYLEVK 136
                          **********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143781.64415141IPR005559CG-1 DNA-binding domain
SMARTSM010762.4E-8018136IPR005559CG-1 DNA-binding domain
PfamPF038592.2E-5021135IPR005559CG-1 DNA-binding domain
SuperFamilySSF812968.0E-15503588IPR014756Immunoglobulin E-set
PfamPF018334.6E-5503578IPR002909IPT domain
PROSITE profilePS5029720.102685796IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.6E-20686797IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.82E-21690796IPR020683Ankyrin repeat-containing domain
CDDcd002042.59E-16691794No hitNo description
SMARTSM002481100702731IPR002110Ankyrin repeat
PROSITE profilePS500889.084702734IPR002110Ankyrin repeat
PfamPF127961.3E-7707797IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.606735767IPR002110Ankyrin repeat
SMARTSM002483.5E-4735764IPR002110Ankyrin repeat
SMARTSM002481900774803IPR002110Ankyrin repeat
PROSITE profilePS500968.242909938IPR000048IQ motif, EF-hand binding site
PfamPF006120.011911929IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1082 aa     Download sequence    Send to blast
MAEGASYGLR RSLDIQQLQF EAQHRWLRPA EICEILRNYR MFHITSEPHN RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKIGSVDVLH CYYAHGEENE NFQRRSYWML  120
EPDMMHIVFV HYLEVKGNKN IVVNTEGDEI PSDSQKVTSS SSSLPTHHSS VPSLSTDSVS  180
PTTSLMSLRE DADSEDIHQA SSGLRPLYES QHSGNGPLTE KIGAGSNSSY LIHPFSGDYE  240
QSSISGTDYI PVVHGDKFRG NDTAYIDGQK THDVATWSTV LQSTAKLHND PSLASSPSIP  300
SSSMGDVLEQ EHTIFSDLLM SKSGLTEVAE SSQSLQSNWQ IPFEDNSGGM PMLTQTQTFG  360
LQFRSDYGTG LLGNETRNAC SESAAILYSF NGEPKEQPMQ QNYLQELEDG QSQHALKSNS  420
ANKVPDEETI NYGLTVKRTL LDKDESLKKV DSFSRWITKE LGEVADLNMQ SSPGISWSTD  480
ECQHVIDDTS LSPSLSQDQL FSINDFSPKW AYAESEIEVL IIGSFLKSQP EVTTCNWSCM  540
FGEVEIPAKV LADGILCCQA PRHKVGRVPF YVTCSNRLAC SEVREFDFRE GFARNVDFAD  600
FYNSSEILLH LRLEDFLSLK PVDPSNHSFE GDMEKRNLIF QLISLREVEE YSIKDEVTTE  660
LDISQHMVKE HLFHKQFKEK LYSWLLHKVT ESGKGPNVLD EDGQGVLHLA AFLGYDWAIN  720
PIISAGVNIN FRDVNGWTAL HWAASCGRER TVAVLVSMGA DCGALTDPSP SSPAGRTAAD  780
LASSYGHKGI SGFLAESSLT HHLETLTMDD QKGGRQEISG MKAVQTVSER SATPVHFGDM  840
PDLCLKDSLT AVRNATQAAD RIHQVYRMQS FQRKQLTQYE SDELGLSDQQ ALSLLASRAC  900
KSGQGDGLAN AAAVQIQKKF RGWKKRQEFL MIRQRVAHVR GHQVRKQYKP IIWSVGILEK  960
IILRWRRKGS GLRGFRPNVI NEVPDQQNNS LKEDDYDYLK EGRKQKEEKI QKALSRVKSM  1020
AQYPEARAQY RRLLNVVEDF RQTKASNEGL INSEETVDGM EDLIDIDMLL DDDNFIPIAF  1080
D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hry_A3e-1169179658157ank3C2_1
5hry_B3e-1169179658157ank3C2_1
5hry_C3e-1169179658157ank3C2_1
5hry_D3e-1169179658157ank3C2_1
5hry_E3e-1169179658157ank3C2_1
5hry_F3e-1169179658157ank3C2_1
5hry_G3e-1169179658157ank3C2_1
5hry_H3e-1169179658157ank3C2_1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.218210.0cotyledon| hypocotyl| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, old leaves, petals, sepals, top of carpels, stigmas, stamen filaments, anthers and siliques, but not in pollen. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G178900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025985438.10.0calmodulin-binding transcription activator 2
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A0R0INT50.0A0A0R0INT5_SOYBN; Uncharacterized protein
STRINGGLYMA15G05900.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74062642
Representative plantOGRP5621565
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]