PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G168100.1.p
Common NameGLYMA_08G168100, LOC100805511
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 387aa    MW: 43986.6 Da    PI: 4.5388
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G168100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.21.2e-151663148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+W++ Ed++l+  ++++G ++W++ ++  g+ R++k+c++rw +yl
  Glyma.08G168100.1.p 16 RGPWSPAEDLKLIAFIQKYGHENWRALPKQAGLLRCGKSCRLRWINYL 63
                         89******************************99************97 PP
2Myb_DNA-binding52.41.2e-1669114148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++T eE+e +++++k lG++ W++Ia++++ gRt++++k+ w+++l
  Glyma.08G168100.1.p  69 RGNFTLEEEENIIRLHKALGNK-WSKIASRLP-GRTDNEIKNVWNTHL 114
                          89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.5E-24766IPR009057Homeodomain-like
PROSITE profilePS5129414.151163IPR017930Myb domain
SuperFamilySSF466892.2E-2914110IPR009057Homeodomain-like
SMARTSM007173.5E-131565IPR001005SANT/Myb domain
PfamPF002491.8E-141663IPR001005SANT/Myb domain
CDDcd001672.95E-91863No hitNo description
PROSITE profilePS5129425.4964118IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-2667118IPR009057Homeodomain-like
SMARTSM007175.1E-1568116IPR001005SANT/Myb domain
PfamPF002494.1E-1569114IPR001005SANT/Myb domain
CDDcd001675.49E-1071114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MGKGRAPCCD KTQVKRGPWS PAEDLKLIAF IQKYGHENWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDVKRG NFTLEEEENI IRLHKALGNK WSKIASRLPG RTDNEIKNVW NTHLKKRLAP  120
KKGSESSADE SKPESSITSA SSSSSESFFS YERPNSPKTT TPCNNDQFND QAEKLSIEDK  180
MEQDSEKQVS NELANITEDP KGSSVSLSSD ESNIVNTSQI VEHKPEEEQL ASPLPYLGHY  240
DVGSMLEEVD KPNQLIEIPW EPDYDFWKLL DDDNSLESFQ SNEVQLGEFP AIQNIILGEE  300
SVHDAEAKKW SQDFENEFGV VGEMKESNKD HFLPKNYAVE PEMDHTQAFD FDDIDMARPE  360
SELDLGYIQL WSSWPQNNNN NNNNSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26161187108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00249DAPTransfer from AT1G79180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G168100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003532930.10.0transcription factor MYB63
RefseqXP_028247046.10.0transcription factor MYB63-like
TrEMBLA0A445JFR30.0A0A445JFR3_GLYSO; Transcription factor MYB63
TrEMBLK7L7680.0K7L768_SOYBN; Uncharacterized protein
STRINGGLYMA08G17861.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100293042
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.14e-85myb domain protein 63