PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G163100.1.p
Common NameGLYMA_08G163100, LOC100790679
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 349aa    MW: 39940.9 Da    PI: 4.6247
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G163100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM183.26.3e-5761331128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lppGfrFhPtdeelv +yL++k++g+++el e+i+evd+yk+ePwdLp k  + +++ ewyf+s+rd+ky++g+r+nrat++gyWkatgk
  Glyma.08G163100.1.p   6 LPPGFRFHPTDEELVAYYLERKITGRSIEL-EIIAEVDLYKCEPWDLPdKsFLPSKDMEWYFYSPRDRKYPNGSRTNRATQAGYWKATGK 94 
                          79****************************.99**************96435566888******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++v+s ++++vg+kktLv+y+grap+g +t+Wvmheyrl
  Glyma.08G163100.1.p  95 DRPVHS-QKKQVGMKKTLVYYRGRAPHGIRTNWVMHEYRL 133
                          ******.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-643157IPR003441NAC domain
PROSITE profilePS5100560.4856157IPR003441NAC domain
PfamPF023653.4E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MAPMSLPPGF RFHPTDEELV AYYLERKITG RSIELEIIAE VDLYKCEPWD LPDKSFLPSK  60
DMEWYFYSPR DRKYPNGSRT NRATQAGYWK ATGKDRPVHS QKKQVGMKKT LVYYRGRAPH  120
GIRTNWVMHE YRLIESVPGT ALSSLKDSYS LCRIFKKTIQ IPAKPNNNEE EQPEIANKKE  180
SMWISEEQML GEDSSGTEIS REMENVDEKI LNHEHPKFPC DASSSDLTQG ACTPTDTGIA  240
EDFQPQFACD EANSAANSYT MGIGYSTNIF QDVEMPSYAD MHYQLPYTPL VMEDFPQINL  300
PETKTTKPEV TDDCMLYDRY RDCMNGTLEE IISLCCTQDN SVPFPMLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-60115712165NO APICAL MERISTEM PROTEIN
1ut4_B7e-60115712165NO APICAL MERISTEM PROTEIN
1ut7_A7e-60115712165NO APICAL MERISTEM PROTEIN
1ut7_B7e-60115712165NO APICAL MERISTEM PROTEIN
3swm_A7e-60115715168NAC domain-containing protein 19
3swm_B7e-60115715168NAC domain-containing protein 19
3swm_C7e-60115715168NAC domain-containing protein 19
3swm_D7e-60115715168NAC domain-containing protein 19
3swp_A7e-60115715168NAC domain-containing protein 19
3swp_B7e-60115715168NAC domain-containing protein 19
3swp_C7e-60115715168NAC domain-containing protein 19
3swp_D7e-60115715168NAC domain-containing protein 19
4dul_A7e-60115712165NAC domain-containing protein 19
4dul_B7e-60115712165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G163100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-122AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003532905.10.0NAC domain-containing protein 96
RefseqXP_028247249.10.0NAC domain-containing protein 96-like
TrEMBLA0A0B2QMG30.0A0A0B2QMG3_GLYSO; NAC domain-containing protein 78
TrEMBLK7L7420.0K7L742_SOYBN; Uncharacterized protein
STRINGGLYMA08G17351.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105083341
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.11e-102NAC domain containing protein 20