PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.08G156500.1.p | ||||||||
Common Name | GLYMA_08G156500, LOC100778933 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 324aa MW: 35802.2 Da PI: 4.5833 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 142.9 | 1.8e-44 | 5 | 130 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 +G+rFhPt elvv++Lk+kv gkk+ +i+e+diyk+ PwdLp k +++++e ewyfF++ +kky +g++ +rat+ gyWkatgkd+ Glyma.08G156500.1.p 5 VGVRFHPTGVELVVYFLKRKVMGKKICD-GFIAELDIYKYAPWDLPdKsCLRTGELEWYFFCPLEKKYGSGSKMKRATEIGYWKATGKDR 93 7************************877.89**************96447778888********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v + ++++vg+ ktL+f++g++p+ge+tdWvmhe rl Glyma.08G156500.1.p 94 VVQH-NNRTVGMIKTLIFHTGKSPRGERTDWVMHEHRL 130 9999.999***************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 49.754 | 3 | 153 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.4E-54 | 4 | 153 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-21 | 5 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MVKTVGVRFH PTGVELVVYF LKRKVMGKKI CDGFIAELDI YKYAPWDLPD KSCLRTGELE 60 WYFFCPLEKK YGSGSKMKRA TEIGYWKATG KDRVVQHNNR TVGMIKTLIF HTGKSPRGER 120 TDWVMHEHRL EDKDLADKGI AQDSYVVCKV FQKEGLGPGK GTHYARPFNE EEWDDEEIGI 180 PCAALTAQVP TLPITSDGSV ANDNHLPASG CIGSASTSCL SGSVPSLGTV NPTGPNDQAV 240 NDDILPMLHI FNDDKWFEEI YNPGQENIVE GAPPSDDFFA GLEDYFAGFS SGQNTGDVGN 300 SDDLDFLELN DLDTPLFYPT TQP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-41 | 6 | 154 | 18 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.17822 | 0.0 | cotyledon| flower| leaf| somatic embryo |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.08G156500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 2e-84 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003531450.1 | 0.0 | NAC domain-containing protein 82 isoform X1 | ||||
Refseq | XP_028243981.1 | 0.0 | NAC domain-containing protein 82-like isoform X1 | ||||
TrEMBL | A0A445JF81 | 0.0 | A0A445JF81_GLYSO; NAC domain-containing protein 82 isoform A | ||||
TrEMBL | I1KTP2 | 0.0 | I1KTP2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA08G16630.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3302 | 34 | 65 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64060.1 | 3e-83 | NAC domain containing protein 103 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.08G156500.1.p |
Entrez Gene | 100778933 |