PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G154500.1.p
Common NameGLYMA_08G154500, LOC100818131
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 347aa    MW: 38804.9 Da    PI: 8.1353
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G154500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.26.8e-06188205320
                          ETTTTEEESSHHHHHHHH CS
              zf-C2H2   3 CpdCgksFsrksnLkrHi 20 
                          C+ C+ksF+r  nL+ H+
  Glyma.08G154500.1.p 188 CHVCSKSFNRYNNLQMHM 205
                          *****************9 PP
2zf-C2H2157.3e-05270292123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y C +C+k+F  k + ++H +++
  Glyma.08G154500.1.p 270 YMCRKCDKTFAVKGDWRTHEKNC 292
                          89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.12E-5179208No hitNo description
PROSITE profilePS5015710.471186213IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-4186205IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.1186208IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-4186205IPR007087Zinc finger, C2H2
PROSITE patternPS000280188208IPR007087Zinc finger, C2H2
SuperFamilySSF576671.84E-6254290No hitNo description
Gene3DG3DSA:3.30.160.602.2E-5266290IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035533270290IPR015880Zinc finger, C2H2-like
SMARTSM00355200296319IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MTDPKSNLYT ETFNFMPLYS HLSSFSTSQS NLFSSYSNNN TFAIQSETSS SYAPPSPPLR  60
EALPLINNIS LRKQKEKNEP SKSGGGMVEE EGGKKRDMDE TTLLMTSTTT EEGDAETVTV  120
ALQIGLPSVA ASDDLNGSRK IPAACAQMNE KEDARSVISG HPFDRLNKVQ YWIPTPSQIL  180
IGPTQFLCHV CSKSFNRYNN LQMHMWGHGS QYRKGPDSLK GTQPSAMLRL PCFCCAPGCK  240
HNIDHPRARP LKDFRTLQTH YKRKHGIKPY MCRKCDKTFA VKGDWRTHEK NCGKIWYCLC  300
GSDFKHKRSL KDHIKAFGHG HGAVDIDCMQ EDEAASEIEH DGDISM*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269|PubMed:17600712}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G154500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003531439.10.0zinc finger protein WIP2
RefseqXP_028246633.10.0zinc finger protein WIP2-like
SwissprotQ9SVY11e-119ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A445JF550.0A0A445JF55_GLYSO; Zinc finger protein WIP2
TrEMBLI1KTM10.0I1KTM1_SOYBN; Uncharacterized protein
STRINGGLYMA08G16390.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-116C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]