PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G152500.1.p
Common NameGLYMA_08G152500, LOC100812802
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 451aa    MW: 49766.2 Da    PI: 6.6055
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G152500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88e-13378423655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR ri +++ +L++l Pk+     k  s a++L +AveYIk+Lq
  Glyma.08G152500.1.p 378 SIAERVRRTRISERIKKLQDLFPKS----EKQTSTADMLDLAVEYIKDLQ 423
                          689*********************8....577*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.57372422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.16E-14375438IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.16E-11376427No hitNo description
Gene3DG3DSA:4.10.280.105.9E-14377435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-11378428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-9378423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MSVMYSPVLN YSDVEHQLRK NQDMDSSIGH PQQHCHQPNS GLLRYCSAPS SLLASLIDNT  60
IHGCVNEESF TSENHHHQQQ QQQQHYLPST SSEMETMLSK LLPSNNGWSN SEALQEFGGK  120
PVKQEIGESI PQEPPQQNGY SYGGSQLIYQ SQQIQGLPNG GSSSASGSAF DGSFGVVHSM  180
ASEDSIQSKM GIRNCSNLFR QKSSPAAFFS IENDLAALRE VGSFKADDVS NGLVTASTGG  240
LHSSHTFSSR PSSCLKRLPQ IAENGNESLE ENCDQSRNLV NDNGSSKCYI PSFTNELWES  300
SAFNAPKTEN EDEIMFSTSN ILESQEADFS FQNLGLTHHL SLPSSSTKMS SIEKFLQIQG  360
SVPCKIRAKR GFATHPRSIA ERVRRTRISE RIKKLQDLFP KSEKQTSTAD MLDLAVEYIK  420
DLQQKVKILS DCKAKCKCTS NEKHYTRTCA *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.513280.0cotyledon| leaf| meristem| root| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G152500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2159410.0GU215941.1 Glycine max clone BAC GmWBb_74M16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003531430.10.0transcription factor bHLH130
TrEMBLI1KTK80.0I1KTK8_SOYBN; Uncharacterized protein
STRINGGLYMA08G16190.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40053359
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.14e-41bHLH family protein