PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.08G149200.1.p | ||||||||
Common Name | GLYMA_08G149200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 339aa MW: 37636.5 Da PI: 4.5421 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.9 | 4e-16 | 100 | 148 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 +y+GVr++k +g+W+AeI+ + + +r+++g+f taeeA +a++a r+++e Glyma.08G149200.1.p 100 KYRGVRQRK-WGKWAAEIYNpF-----QsTRIWIGTFSTAEEASQAYEARRLEFE 148 8*******9.********9955.....35*******************9999876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.6E-19 | 99 | 148 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.7E-13 | 100 | 154 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.89E-21 | 100 | 147 | No hit | No description |
SuperFamily | SSF54171 | 4.77E-15 | 100 | 147 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.2E-11 | 100 | 149 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.9 | 100 | 157 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-10 | 101 | 112 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-10 | 123 | 139 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 339 aa Download sequence Send to blast |
MAESQKQPAS RPKQKLHSMQ EPKAMRKLHI ICNDPDATDS SEDELERIQN PRRVKRSACE 60 IPLPHTFTTP EMRVSTKDQP QSKKRALTHT PSARRNTSRK YRGVRQRKWG KWAAEIYNPF 120 QSTRIWIGTF STAEEASQAY EARRLEFEAM AKAQAYKTGS RSAAEPLATT SEKSNCRNSS 180 SAAAAVDVSV SEKVSTTSDD SDKSVLSHNS PLSVLELDTP ASKFIEMGNV STDEAIEANN 240 LVDELAELEI PDLNLLNLPP PPSAAVPSEI EPNFGLDFDW LSFDDYGQGF DDFGGLEDIH 300 ICGFDDNEPS ELPDFDFGDF GADEFSGWTE DPLNIHYA* |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00217 | DAP | Transfer from AT1G68550 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.08G149200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028242648.1 | 0.0 | ethylene-responsive transcription factor ERF118-like | ||||
TrEMBL | A0A0R0IM74 | 0.0 | A0A0R0IM74_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445JEU3 | 0.0 | A0A445JEU3_GLYSO; Ethylene-responsive transcription factor ERF118 | ||||
STRING | GLYMA08G15830.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2690 | 34 | 72 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68550.2 | 2e-29 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.08G149200.1.p |