PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G146900.1.p
Common NameGLYMA_08G146900, LOC100804613
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 488aa    MW: 55680.6 Da    PI: 4.4838
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G146900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS264.53.6e-811184772374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg..dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                           +lLl+ Aeav++++  la+ ++++l++ +s +     ++Rla +ft+ L  + ++  +el +  ++s+     +++++ ++++++e+sP
  Glyma.08G146900.1.p 118 ADLLLTGAEAVEAQNWPLASDIIEKLNNASSLENgdGLLNRLALFFTQSLYYKSTN-APELLQCGAVST-----HTNAFCVFQVLQELSP 201
                          679**************************88765434689***********99998.666665444444.....457888999******* PP

                 GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                          ++kf+h+taNqaIlea+eg+e +HiiDfdi++G+QWp+L+  La + ++  slR+T++   ++  ++++++tg+rL++fA++++ pf f+
  Glyma.08G146900.1.p 202 YVKFAHFTANQAILEATEGAEDLHIIDFDIMEGIQWPPLMVDLAMK-KSVNSLRVTAITV-NQRGADSVQQTGRRLKEFAASINFPFMFD 289
                          ********************************************98.5668*********.55789************************ PP

                 GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnsesFlerflealeyys 265
                           l+++r ed++  eL    g +l+Vn+++  + ++++s sl +   ++L+ v +lsP++vv+ve+e      + s sF+e f+eal++y+
  Glyma.08G146900.1.p 290 QLMMEREEDFQGIEL----GQTLIVNCMI-HQWMPNRSFSLVK---TFLDGVTKLSPRLVVLVEEElfnfPRLKSMSFVEFFCEALHHYT 371
                          *****9999988777....99*******9.5667888899988...********************7553345999************** PP

                 GRAS 266 alfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvksdgyrvee 353
                          al dsl+++l   +  e + +E+e++g +i + v +   er+er+     W+e + +  GFk vp+s+ + +qak l++ ++  gy v+ 
  Glyma.08G146900.1.p 372 ALCDSLASNLWGSHkMELSLIEKEVIGLRILDSVRQFPCERKERMV----WEEGFYSlKGFKRVPMSTCNISQAKFLVSLFG-GGYWVQY 456
                          ******888866663777899*********************9999....***997758***********************.89***** PP

                 GRAS 354 esgslvlgWkdrpLvsvSaWr 374
                          e+g l l+Wk+rpL+++S W+
  Glyma.08G146900.1.p 457 EKGRLALCWKSRPLTVASIWE 477
                          ********************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.82891458IPR005202Transcription factor GRAS
PfamPF035141.2E-78118477IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MKTMDFEQFY YSFGPPYMNQ LHECISENAF PFQTENLLSP NTFLDEMFDQ EYSMEGLLQQ  60
HANNQEDFGF LKHDDPLETE FCHGFSPSAE ENMHVSMEEG DSCLKGIQAE LMEETSLADL  120
LLTGAEAVEA QNWPLASDII EKLNNASSLE NGDGLLNRLA LFFTQSLYYK STNAPELLQC  180
GAVSTHTNAF CVFQVLQELS PYVKFAHFTA NQAILEATEG AEDLHIIDFD IMEGIQWPPL  240
MVDLAMKKSV NSLRVTAITV NQRGADSVQQ TGRRLKEFAA SINFPFMFDQ LMMEREEDFQ  300
GIELGQTLIV NCMIHQWMPN RSFSLVKTFL DGVTKLSPRL VVLVEEELFN FPRLKSMSFV  360
EFFCEALHHY TALCDSLASN LWGSHKMELS LIEKEVIGLR ILDSVRQFPC ERKERMVWEE  420
GFYSLKGFKR VPMSTCNISQ AKFLVSLFGG GYWVQYEKGR LALCWKSRPL TVASIWEPMA  480
YLDDKVK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-3612547827380Protein SCARECROW
5b3h_A8e-3612547826379Protein SCARECROW
5b3h_D8e-3612547826379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G146900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003532857.20.0nodulation-signaling pathway 2 protein
RefseqXP_028247136.10.0nodulation-signaling pathway 2 protein-like
TrEMBLA0A445JEU80.0A0A445JEU8_GLYSO; Nodulation-signaling pathway 2 protein
TrEMBLK7L6R70.0K7L6R7_SOYBN; Uncharacterized protein
STRINGGLYMA08G15530.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131482130
Representative plantOGRP8945915
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.18e-45GRAS family protein