PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.08G143400.3.p | ||||||||
Common Name | GLYMA_08G143400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 181aa MW: 20326 Da PI: 9.999 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 33.2 | 1e-10 | 157 | 178 | 1 | 22 |
---SS-EEEEEEE--TT-SS-E CS WRKY 1 ldDgynWrKYGqKevkgsefpr 22 ldDgy+WrKYGqK+vk++++pr Glyma.08G143400.3.p 157 LDDGYKWRKYGQKVVKNTQHPR 178 59*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 9.1E-13 | 142 | 178 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.72E-10 | 149 | 179 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 13.253 | 152 | 180 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.7E-7 | 158 | 179 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1901141 | Biological Process | regulation of lignin biosynthetic process | ||||
GO:1904369 | Biological Process | positive regulation of sclerenchyma cell differentiation | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MSTTSHPIVH HSLFDEQDQI PTQMGFFSFP TNLTFPPLGC HQSSLKAFSS IAPSSLAISQ 60 QDSASNLTAE TLFSTTAQKS REDLTSSFGG GQFLSLHRSS VNPWALGEVA ECFSSKRSGF 120 DDHHFRISAM KMKKIKARRK VREPRFCFKT MSDVDVLDDG YKWRKYGQKV VKNTQHPRYI 180 * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.26847 | 0.0 | stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.08G143400.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT090914 | 0.0 | BT090914.1 Soybean clone JCVI-FLGm-5N5 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001237342.2 | 1e-130 | WRKY transcription factor 40 | ||||
Refseq | XP_028246516.1 | 1e-130 | probable WRKY transcription factor 13 isoform X1 | ||||
Swissprot | Q9SVB7 | 4e-27 | WRK13_ARATH; Probable WRKY transcription factor 13 | ||||
TrEMBL | I1KTC0 | 1e-132 | I1KTC0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA08G15210.1 | 1e-130 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39410.1 | 3e-21 | WRKY DNA-binding protein 13 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.08G143400.3.p |