PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G143400.1.p
Common NameGLYMA_08G143400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 236aa    MW: 26804.2 Da    PI: 9.2293
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G143400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.42.6e-32157215159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  Glyma.08G143400.1.p 157 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHS 215
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-33142215IPR003657WRKY domain
SuperFamilySSF1182901.06E-28149216IPR003657WRKY domain
PROSITE profilePS5081129.356152217IPR003657WRKY domain
SMARTSM007749.8E-37157216IPR003657WRKY domain
PfamPF031063.6E-25158214IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MSTTSHPIVH HSLFDEQDQI PTQMGFFSFP TNLTFPPLGC HQSSLKAFSS IAPSSLAISQ  60
QDSASNLTAE TLFSTTAQKS REDLTSSFGG GQFLSLHRSS VNPWALGEVA ECFSSKRSGF  120
DDHHFRISAM KMKKIKARRK VREPRFCFKT MSDVDVLDDG YKWRKYGQKV VKNTQHPRSY  180
YRCTQDNCRV KKRVERLAED PRMVITTYEG RHVHSPSNDL EDSQTPSQLD SFLLW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-26149214974Probable WRKY transcription factor 4
2lex_A3e-26149214974Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.268470.0stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G143400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0909140.0BT090914.1 Soybean clone JCVI-FLGm-5N5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237342.21e-177WRKY transcription factor 40
RefseqXP_028246516.11e-177probable WRKY transcription factor 13 isoform X1
SwissprotQ9SVB77e-59WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A445JEL41e-176A0A445JEL4_GLYSO; Putative WRKY transcription factor 13
TrEMBLI1KTB91e-176I1KTB9_SOYBN; Uncharacterized protein
STRINGGLYMA08G15210.11e-177(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40793361
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.11e-52WRKY DNA-binding protein 13