PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G142400.1.p
Common NameGLYMA_08G142400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 185aa    MW: 20833.8 Da    PI: 7.5834
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G142400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.43.1e-28106164159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +dDgy+WrKYG+K+vk+s++ r+YY+C+s gC+vkk+ver+++d ++v++tYeg Hnhe
  Glyma.08G142400.1.p 106 MDDGYKWRKYGKKSVKSSPNLRNYYKCSSGGCSVKKRVERDRDDYSYVITTYEGVHNHE 164
                          59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-3193166IPR003657WRKY domain
SuperFamilySSF1182902.48E-2698166IPR003657WRKY domain
PROSITE profilePS5081129.964101166IPR003657WRKY domain
SMARTSM007742.2E-30106165IPR003657WRKY domain
PfamPF031064.3E-22107164IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MDFYFGNSPP YPNNYAHNSL NMALSSPEIA LSDYLMLDDY VDHQDSRSSQ STESSEKATF  60
NDATHGFSTG ATSKNNNINC KNGINENKGG VGPRIAFRTK SELEIMDDGY KWRKYGKKSV  120
KSSPNLRNYY KCSSGGCSVK KRVERDRDDY SYVITTYEGV HNHESPFTTY YSPISFVHSD  180
TTFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-2494166274WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.571110.0cotyledon| leaf| meristem| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G142400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0957010.0BT095701.1 Soybean clone JCVI-FLGm-15I9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237313.21e-136WRKY transcription factor 6
TrEMBLC6TDN91e-135C6TDN9_SOYBN; Uncharacterized protein
STRINGGLYMA08G15050.11e-135(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112034110
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.15e-41WRKY DNA-binding protein 51