PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G140100.1.p
Common NameGLYMA_08G140100, LOC100780003
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 380aa    MW: 43105 Da    PI: 8.2209
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G140100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.87.3e-1183134459
                          XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                          +k +rr+++NReAAr+sR+RKka++++Le    +L +      +e+++ k+++ kl
  Glyma.08G140100.1.p  83 DKTQRRLAQNREAARKSRLRKKAYVQQLESCRLKLVQLE----QEVDHAKQQATKL 134
                          799**************************8665555544....3667777766665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.9E-580140IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.3E-882135No hitNo description
PROSITE profilePS502178.682112IPR004827Basic-leucine zipper domain
PfamPF001701.4E-783118IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.63E-884135No hitNo description
PROSITE patternPS00036087102IPR004827Basic-leucine zipper domain
PfamPF141447.7E-30176250IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MDATSSQFVS SRRMGVYDPI HQISMWEETF KSNDTNNLTV STSIIGEVEM KLDNQVHVQS  60
EDASHGIFGT SVKYDQDANR LTDKTQRRLA QNREAARKSR LRKKAYVQQL ESCRLKLVQL  120
EQEVDHAKQQ ATKLQGLYIG DGLGSNNLGF AGSVNSGITL FKMEYGNWLE EQNRQILELR  180
TALSSHIGDI QLGTLVQGIM NHYTKLFSMK SAAAKADVFY VMSGMWKTTA ERFFLWIGGF  240
RPSELLKVLV PLSEPLTEQQ RFDAYGLEKS CQQAEDALSQ GMEKLQQMLA DSVGPGQLVE  300
GTHIPQMDTA MERLEALVSF VNQADHLRQE TLRQMYRILT TRQTGRFLLD LGEYFQRLRA  360
LSKLWANRPQ ELTKSVIKH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.507830.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269|PubMed:8628224}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G140100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006585296.10.0transcription factor TGA1 isoform X1
RefseqXP_006585297.10.0transcription factor TGA1 isoform X1
RefseqXP_006585298.10.0transcription factor TGA1 isoform X1
RefseqXP_006585299.10.0transcription factor TGA1 isoform X1
RefseqXP_014634436.10.0transcription factor TGA1 isoform X1
RefseqXP_014634437.10.0transcription factor TGA1 isoform X1
SwissprotQ392371e-173TGA1_ARATH; Transcription factor TGA1
TrEMBLA0A0R0IQB80.0A0A0R0IQB8_SOYBN; Uncharacterized protein
STRINGGLYMA08G14840.50.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109634104
Representative plantOGRP26791132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.51e-176bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  4. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  5. Sun T, et al.
    TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g).
    New Phytol., 2018. 217(1): p. 344-354
    [PMID:28898429]