PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.08G137600.2.p | ||||||||
Common Name | GLYMA_08G137600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 313aa MW: 35216.3 Da PI: 4.9036 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 67.1 | 3.3e-21 | 120 | 170 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+ge Glyma.08G137600.2.p 120 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDNAAFKLRGE 170 59******9.**********965...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.14E-35 | 119 | 179 | No hit | No description |
PROSITE profile | PS51032 | 23.235 | 120 | 177 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-24 | 120 | 178 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-32 | 120 | 178 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-39 | 120 | 183 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.7E-15 | 121 | 170 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-11 | 121 | 132 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-11 | 143 | 159 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MGTAIDMYNS SNIVADFLDP YSEELMKALK PFMKSDYFSA SSSSSLESQP CSFSSNSLPT 60 SYPSSNQIKL NQLTPDQIVQ IQAQIHIQQQ QQHVAQTQTH LGPKRVPMKH AGTAAKPTKL 120 YRGVRQRHWG KWVAEIRLPK NRTRLWLGTF DTAEEAALAY DNAAFKLRGE FARLNFPHLR 180 HHGAFVFGEF GDYKPLPSSV DSKLQAICES LAKQEEKPCC SVEDVKPVIH AAELAEVESD 240 VAKSNAEYVY PEFEDFKVEH ENPMFSGESS SPESSVTFLD FSDFSDSNNQ WDEMENFGLE 300 KFPSVEIDWE AI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-22 | 119 | 177 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.8896 | 0.0 | cotyledon| hypocotyl| leaf| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.08G137600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY296651 | 0.0 | AY296651.1 Glycine max DREB2 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001345278.1 | 0.0 | ethylene-responsive transcription factor | ||||
Refseq | XP_028243789.1 | 0.0 | ethylene-responsive transcription factor ERF060-like | ||||
Swissprot | O65665 | 2e-80 | ERF60_ARATH; Ethylene-responsive transcription factor ERF060 | ||||
TrEMBL | A0A445JEC5 | 0.0 | A0A445JEC5_GLYSO; Ethylene-responsive transcription factor ERF060 | ||||
TrEMBL | Q4QYE1 | 0.0 | Q4QYE1_SOYBN; DREB2 | ||||
STRING | GLYMA08G14600.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39780.1 | 2e-60 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.08G137600.2.p |
Entrez Gene | 100818839 |
Publications ? help Back to Top | |||
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