PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G135200.2.p
Common NameGLYMA_08G135200, LOC100783055
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CAMTA
Protein Properties Length: 1066aa    MW: 120152 Da    PI: 5.8298
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G135200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1177.81.3e-55211363118
                 CG-1   3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                          + ++rwl++ ei+aiL n++k++++ e+++ p+sgsl+L++rk++r+frkDG++w+kkkdgktvrE+he+LK g+v+vl+cyYah+een+
  Glyma.08G135200.2.p  21 EAQHRWLRPAEICAILGNYKKFRIAPEPAHMPPSGSLFLFDRKVLRHFRKDGHNWRKKKDGKTVREAHERLKAGSVDVLHCYYAHGEENE 110
                          669*************************************************************************************** PP

                 CG-1  93 tfqrrcywlLeeelekivlvhylevk 118
                          +fqrr+ywlLeeel++ivlvhy++vk
  Glyma.08G135200.2.p 111 NFQRRTYWLLEEELSHIVLVHYRQVK 136
                          ***********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143778.81215141IPR005559CG-1 DNA-binding domain
SMARTSM010764.4E-7318136IPR005559CG-1 DNA-binding domain
PfamPF038591.2E-4821134IPR005559CG-1 DNA-binding domain
SuperFamilySSF525408.23E-8376406IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF018333.9E-5483559IPR002909IPT domain
SuperFamilySSF812963.11E-16483568IPR014756Immunoglobulin E-set
Gene3DG3DSA:2.60.40.102.7E-4484557IPR013783Immunoglobulin-like fold
SuperFamilySSF484032.02E-18662778IPR020683Ankyrin repeat-containing domain
CDDcd002045.69E-15664776No hitNo description
Gene3DG3DSA:1.25.40.201.3E-18664780IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029719.518667788IPR020683Ankyrin repeat-containing domain
PfamPF127967.7E-8689784IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.351717749IPR002110Ankyrin repeat
SMARTSM002480.022717746IPR002110Ankyrin repeat
SMARTSM00248110756785IPR002110Ankyrin repeat
SuperFamilySSF525408.23E-8872939IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001512889911IPR000048IQ motif, EF-hand binding site
PfamPF006120.026891910IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.455891919IPR000048IQ motif, EF-hand binding site
SMARTSM000150.16912934IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.584913937IPR000048IQ motif, EF-hand binding site
PfamPF006120.0032915932IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1066 aa     Download sequence    Send to blast
MAEARLYAPP SQLDIKQIIL EAQHRWLRPA EICAILGNYK KFRIAPEPAH MPPSGSLFLF  60
DRKVLRHFRK DGHNWRKKKD GKTVREAHER LKAGSVDVLH CYYAHGEENE NFQRRTYWLL  120
EEELSHIVLV HYRQVKGTKA NFTSAKENEE SLPYAQQTDK IMPQTEMDTS LSSTLHPHSY  180
QVPSKTVDTS MNSAQTSEYE EAESDDQEKL PIIPGVNYIS LTQDNKNKDI LNAGLTYESP  240
KPLGFSSWEG ILENNAGSQH VHFQPLFPGT QPDNMGINSN FSQGEEIMVP YLTTSIAKQH  300
ENGSIIKAEG NWQVYDVDSL RMSSWPIDSA YSGSTCEVSC SNCEQEVNDV DFQKSLEQCL  360
LHSHKQNKVL MQNDLQEKLL NEKEKIKSNL EAYGIEDTYL SFKRTLLDGP PAEEGLKKLD  420
SFNQWMSKEL GDVEESNKPS TSGGYWDTVE TENEVGNTTI PSQGHLDTYV LDPSVSHDQL  480
FSIIDYSPSW AFEGSEIKVI ISGEFLRSQH EAEQCKWSCM FGEVEVPAVI IAKGVLCCHT  540
PPHKAGRVPF YVTCSNRLAC SEVREFDFQV HYTPEDTTGE NRGSTFDTFS IRFGELLSLG  600
HAFPQNSDSI SVSEKSQLRS KINSLLREDD DDWDKLLKLT QEKDFSPENL REQLLQNLLK  660
DKLHAWLLQK ITEEGKGPNV LDEGGQGVLH FAAALGYDWA LEPTIVAGVN VNFRDVNGWT  720
SLHWAAFCGR ERTVAFLISL GAAPGALTDP CPEHPSGRTP ADLASANGHK GIAGYLAESS  780
LSAHLTTLDL NRDAGENSGA KVVQRLQNIA QVNDLDGLSY ELSLKDSLAA VCNATQAAAR  840
IHQVFRMQSF QRKQLKEYDD DKLGLSDERA LSLIKMNVKS HKSGPRDEPV HAAAIRIQNK  900
FRSWKGRREF LMIRQRIVKI QAHVRGHQVR KSCGKIIWSV GILEKVILRW RRKGSGLRGF  960
KPEANSEGTM IQDVSSTDDD YDVLKEGRKQ TEQRLQKALA RVKSMVQYPE ARDQYHRLLN  1020
VVTEIQENQV KHESSSNNSE EPREFGDLND LEALLDEDIF MPTAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4hb5_A2e-1266880520157Engineered Protein
4hb5_B2e-1266880520157Engineered Protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.422140.0leaf| root| seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G135200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006585273.10.0calmodulin-binding transcription activator 1 isoform X2
TrEMBLA0A0R0IS990.0A0A0R0IS99_SOYBN; Uncharacterized protein
STRINGGLYMA08G14370.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains