PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G135200.1.p
Common NameGLYMA_08G135200, LOC100783055
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CAMTA
Protein Properties Length: 1103aa    MW: 124430 Da    PI: 5.8783
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G135200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1177.81.4e-55211363118
                 CG-1   3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                          + ++rwl++ ei+aiL n++k++++ e+++ p+sgsl+L++rk++r+frkDG++w+kkkdgktvrE+he+LK g+v+vl+cyYah+een+
  Glyma.08G135200.1.p  21 EAQHRWLRPAEICAILGNYKKFRIAPEPAHMPPSGSLFLFDRKVLRHFRKDGHNWRKKKDGKTVREAHERLKAGSVDVLHCYYAHGEENE 110
                          669*************************************************************************************** PP

                 CG-1  93 tfqrrcywlLeeelekivlvhylevk 118
                          +fqrr+ywlLeeel++ivlvhy++vk
  Glyma.08G135200.1.p 111 NFQRRTYWLLEEELSHIVLVHYRQVK 136
                          ***********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143778.81215141IPR005559CG-1 DNA-binding domain
SMARTSM010764.4E-7318136IPR005559CG-1 DNA-binding domain
PfamPF038591.2E-4821134IPR005559CG-1 DNA-binding domain
SuperFamilySSF525408.76E-8413443IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF812963.67E-16520605IPR014756Immunoglobulin E-set
PfamPF018334.0E-5520596IPR002909IPT domain
Gene3DG3DSA:2.60.40.102.8E-4521594IPR013783Immunoglobulin-like fold
SuperFamilySSF484032.02E-18699815IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.4E-18701817IPR020683Ankyrin repeat-containing domain
CDDcd002045.97E-15701813No hitNo description
PROSITE profilePS5029719.518704825IPR020683Ankyrin repeat-containing domain
PfamPF127968.0E-8726821IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.351754786IPR002110Ankyrin repeat
SMARTSM002480.022754783IPR002110Ankyrin repeat
SMARTSM00248110793822IPR002110Ankyrin repeat
SuperFamilySSF525408.76E-8909976IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001512926948IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.455928956IPR000048IQ motif, EF-hand binding site
PfamPF006120.027928947IPR000048IQ motif, EF-hand binding site
SMARTSM000150.16949971IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.584950974IPR000048IQ motif, EF-hand binding site
PfamPF006120.0033952969IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1103 aa     Download sequence    Send to blast
MAEARLYAPP SQLDIKQIIL EAQHRWLRPA EICAILGNYK KFRIAPEPAH MPPSGSLFLF  60
DRKVLRHFRK DGHNWRKKKD GKTVREAHER LKAGSVDVLH CYYAHGEENE NFQRRTYWLL  120
EEELSHIVLV HYRQVKGTKA NFTSAKENEE SLPYAQQTDK IMPQTEMDTS LSSTLHPHSY  180
QVPSKTVDTS MNSAQTSEYE EAESAFNNHA SSEFYSFLEL QRPVEKISPQ PADFYSPRPL  240
INDQEKLPII PGVNYISLTQ DNKNKDILNA GLTYESPKPL GFSSWEGILE NNAGSQHVHF  300
QPLFPGTQPD NMGINSNFSQ GEEIMVPYLT TSIAKQHENG SIIKAEGNWQ VYDVDSLRMS  360
SWPIDSAYSG STCEVSCSNC EQEVNDVDFQ KSLEQCLLHS HKQNKVLMQN DLQEKLLNEK  420
EKIKSNLEAY GIEDTYLSFK RTLLDGPPAE EGLKKLDSFN QWMSKELGDV EESNKPSTSG  480
GYWDTVETEN EVGNTTIPSQ GHLDTYVLDP SVSHDQLFSI IDYSPSWAFE GSEIKVIISG  540
EFLRSQHEAE QCKWSCMFGE VEVPAVIIAK GVLCCHTPPH KAGRVPFYVT CSNRLACSEV  600
REFDFQVHYT PEDTTGENRG STFDTFSIRF GELLSLGHAF PQNSDSISVS EKSQLRSKIN  660
SLLREDDDDW DKLLKLTQEK DFSPENLREQ LLQNLLKDKL HAWLLQKITE EGKGPNVLDE  720
GGQGVLHFAA ALGYDWALEP TIVAGVNVNF RDVNGWTSLH WAAFCGRERT VAFLISLGAA  780
PGALTDPCPE HPSGRTPADL ASANGHKGIA GYLAESSLSA HLTTLDLNRD AGENSGAKVV  840
QRLQNIAQVN DLDGLSYELS LKDSLAAVCN ATQAAARIHQ VFRMQSFQRK QLKEYDDDKL  900
GLSDERALSL IKMNVKSHKS GPRDEPVHAA AIRIQNKFRS WKGRREFLMI RQRIVKIQAH  960
VRGHQVRKSC GKIIWSVGIL EKVILRWRRK GSGLRGFKPE ANSEGTMIQD VSSTDDDYDV  1020
LKEGRKQTEQ RLQKALARVK SMVQYPEARD QYHRLLNVVT EIQENQVKHE SSSNNSEEPR  1080
EFGDLNDLEA LLDEDIFMPT AT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4hb5_A2e-1270584220157Engineered Protein
4hb5_B2e-1270584220157Engineered Protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.39900.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G135200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006585272.10.0calmodulin-binding transcription activator 3 isoform X1
TrEMBLI1KT100.0I1KT10_SOYBN; Uncharacterized protein
STRINGGLYMA08G14370.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82842735
Representative plantOGRP5621565
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains