PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G132800.1.p
Common NameGlyma08g14130.1
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 313aa    MW: 35437 Da    PI: 4.6613
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G132800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.79.8e-1957110356
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          k+++++ +q+++Le+ Fe ++++  +++ +LA++lgL+ rqV vWFqNrRa++k
  Glyma.08G132800.1.p  57 KKRRLSVDQVKALEKNFEVENKLEPDRKLKLAQELGLQPRQVAVWFQNRRARWK 110
                          566899***********************************************9 PP
2HD-ZIP_I/II127.36.8e-4156148193
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          ekkrrls +qvk+LE++Fe e+kLep+rK +la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++y++lk + ++L++++e+L +e
  Glyma.08G132800.1.p  56 EKKRRLSVDQVKALEKNFEVENKLEPDRKLKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYESLKLNYDTLQQDHEALLKE 145
                          69**************************************************************************************99 PP

          HD-ZIP_I/II  91 lke 93 
                          +ke
  Glyma.08G132800.1.p 146 IKE 148
                          987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.63E-1941114IPR009057Homeodomain-like
PROSITE profilePS5007117.42752112IPR001356Homeobox domain
SMARTSM003899.2E-1855116IPR001356Homeobox domain
PfamPF000466.1E-1657110IPR001356Homeobox domain
CDDcd000861.33E-1657113No hitNo description
Gene3DG3DSA:1.10.10.608.9E-2059119IPR009057Homeodomain-like
PRINTSPR000311.2E-58392IPR000047Helix-turn-helix motif
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PRINTSPR000311.2E-592108IPR000047Helix-turn-helix motif
PfamPF021836.1E-16112153IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0030308Biological Processnegative regulation of cell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MKRLGSSDSL GALMTICPPT DEHSPRNNHA YGREFQSMLE GLDEEGCVEE PGHHSEKKRR  60
LSVDQVKALE KNFEVENKLE PDRKLKLAQE LGLQPRQVAV WFQNRRARWK TKQLERDYGV  120
LKANYESLKL NYDTLQQDHE ALLKEIKELK SRLVQEENNN NTESDVSVKE EMLTTTLCET  180
AIPGSDTKEL SYECFNKSDE VGGGSSVFHV DFKDGSSDSD SSAILNEENN NHSPNNNAAI  240
SSCGVLQSHG LLLSPSSSSM NNCFQFQKQY QTTTTQYVKM EEHNFLSADE ACNFFSDEQA  300
PTLQWYCSEE WS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104112RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.320000.0cotyledon| epicotyl| leaf| meristem| pod| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed with a lower level in siliques. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00051PBMTransfer from AT4G40060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G132800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311650.0KT031165.1 Glycine max clone HN_CCL_178 homeodomain/HOMEOBOX transcription factor (Glyma08g14130.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006584635.10.0homeodomain-leucine zipper protein 56 isoform X1
SwissprotQ940J11e-82ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16
TrEMBLA0A0K2CT980.0A0A0K2CT98_SOYBN; Homeodomain/HOMEOBOX transcription factor (Fragment)
TrEMBLI1KSY30.0I1KSY3_SOYBN; Uncharacterized protein
STRINGGLYMA08G14130.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.11e-75homeobox protein 16
Publications ? help Back to Top
  1. Tang Z,Sadka A,Morishige DT,Mullet JE
    Homeodomain leucine zipper proteins bind to the phosphate response domain of the soybean VspB tripartite promoter.
    Plant Physiol., 2001. 125(2): p. 797-809
    [PMID:11161037]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]