PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.08G124400.2.p

Common Name

GLYMA_08G124400

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

HD-ZIP

Protein Properties

Length: 720aa MW: 79060.2 Da PI: 7.7935

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.08G124400.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.1	7.1e-19	22	79	4	57
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++t+eq+e+Le+++ ++++ps ++r+++ +++ +++++q+kvWFqNrR +ek+ Glyma.08G124400.2.p 22 YVRYTPEQVEALERVYIECPKPSSSRRQQIIRECpllaNIETKQIKVWFQNRRCREKQ 79 6789****************************************************97 PP
2	bZIP_1	20.3	1.2e-06	73	115	18	60
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 rr+R++ ++e +L++ +L+a Nk L +e+++l+k+v++l Glyma.08G124400.2.p 73 RRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSQLV 115 9***************************************985 PP
3	START	174.3	7.6e-55	170	378	2	205
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 +a+e+++++++ka+ ++ +Wv++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++ +l vi +g g Glyma.08G124400.2.p 170 IAQETLAAFLSKATGTAVNWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCLNVLSVIPTGngG 258 678999**************************************************.8888888888***************** PP EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS START 90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175 +++lm+++++a+++l++ Rdf+++Ry+ +l++g++vi+++S++s + p+ s++vRae+lpSg+li+++++g+s v++v+hvdl+ + Glyma.08G124400.2.p 259 TIELMYMQTYAPTTLAAaRDFWTLRYTTSLEDGSLVICERSLTSSTGGPTgpaASNFVRAEMLPSGYLIRSCEGGGSIVHIVDHVDLDVW 348 *********************************************9999********************************* PP XXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 176 lphwllrslvksglaegaktwvatlqrqce 205 +++++lr+l++s + ++k ++a+l++ ++ Glyma.08G124400.2.p 349 SVPEVLRPLYESPKFLAQKLTTAALRNVRQ 378 ***********************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	1.2E-15	18	84	IPR001356	Homeobox domain
CDD	cd00086	8.86E-16	21	81	No hit	No description
SuperFamily	SSF46689	4.71E-16	21	83	IPR009057	Homeodomain-like
Pfam	PF00046	1.8E-16	22	79	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.2E-17	23	79	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.965	24	80	IPR001356	Homeobox domain
CDD	cd14686	1.93E-6	73	112	No hit	No description
PROSITE profile	PS50848	24.334	160	360	IPR002913	START domain
CDD	cd08875	1.08E-68	164	380	No hit	No description
SMART	SM00234	2.9E-50	169	379	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	1.4E-21	169	352	IPR023393	START-like domain
SuperFamily	SSF55961	4.12E-36	170	381	No hit	No description
Pfam	PF01852	3.7E-52	170	378	IPR002913	START domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 720 aa Download sequence Send to blast
MALCMQRDSA SNKQQLMDCG KYVRYTPEQV EALERVYIEC PKPSSSRRQQ IIRECPLLAN 60 IETKQIKVWF QNRRCREKQR KEASRLQTVN RKLSAMNKLL MEENDRLQKQ VSQLVYDNGF 120 MKQQIHTASA TTTTDNSCES VVVSGQRQHQ NPKIQHPQWD ANNPAGLLAI AQETLAAFLS 180 KATGTAVNWV QMIGMKPGPD SIGIVAVSRN CSGVAARACG LVSLEPTKVA EILKDRPSWY 240 RDCRCLNVLS VIPTGNGGTI ELMYMQTYAP TTLAAARDFW TLRYTTSLED GSLVICERSL 300 TSSTGGPTGP AASNFVRAEM LPSGYLIRSC EGGGSIVHIV DHVDLDVWSV PEVLRPLYES 360 PKFLAQKLTT AALRNVRQIA QESSGEVQYG GGRQPAVLRT FSQRLCKGFN DAVNGFVDDG 420 WSLMGNDGVE DVTIGINSSP NKFFSSHYNT SMLPAFGGGV LCAKASMLLQ NVPPALLVRF 480 LREHRSEWAN YGVDAYSSAC LKASPYAVPC ARPSGFPSSH VIIPLAHTIE HEEFLEVVRI 540 EGNAFPPDDV ALACDMYLMQ LCSGIDENAI GACAQLVFAP IDESFADDAL LLPSGFRIIP 600 LDPKTDGPAS TRTLDLASTL ETGSGNARSA GESDLNNYNL RSVLTIAFQF TFENHLRDNV 660 AVMARQYVRN VVRSVQRVAM AIAPSRISTQ LGPKSLPGPP EALTLARWIC KSYRFAFFY*

Sequence ? help Back to Top

Protein Sequence Length: 720 aa Download sequence Send to blast

MALCMQRDSA SNKQQLMDCG KYVRYTPEQV EALERVYIEC PKPSSSRRQQ IIRECPLLAN  60
IETKQIKVWF QNRRCREKQR KEASRLQTVN RKLSAMNKLL MEENDRLQKQ VSQLVYDNGF  120
MKQQIHTASA TTTTDNSCES VVVSGQRQHQ NPKIQHPQWD ANNPAGLLAI AQETLAAFLS  180
KATGTAVNWV QMIGMKPGPD SIGIVAVSRN CSGVAARACG LVSLEPTKVA EILKDRPSWY  240
RDCRCLNVLS VIPTGNGGTI ELMYMQTYAP TTLAAARDFW TLRYTTSLED GSLVICERSL  300
TSSTGGPTGP AASNFVRAEM LPSGYLIRSC EGGGSIVHIV DHVDLDVWSV PEVLRPLYES  360
PKFLAQKLTT AALRNVRQIA QESSGEVQYG GGRQPAVLRT FSQRLCKGFN DAVNGFVDDG  420
WSLMGNDGVE DVTIGINSSP NKFFSSHYNT SMLPAFGGGV LCAKASMLLQ NVPPALLVRF  480
LREHRSEWAN YGVDAYSSAC LKASPYAVPC ARPSGFPSSH VIIPLAHTIE HEEFLEVVRI  540
EGNAFPPDDV ALACDMYLMQ LCSGIDENAI GACAQLVFAP IDESFADDAL LLPSGFRIIP  600
LDPKTDGPAS TRTLDLASTL ETGSGNARSA GESDLNNYNL RSVLTIAFQF TFENHLRDNV  660
AVMARQYVRN VVRSVQRVAM AIAPSRISTQ LGPKSLPGPP EALTLARWIC KSYRFAFFY*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.19422	0.0	hypocotyl\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269\|PubMed:17999151}.
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269\|PubMed:17999151}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.08G124400.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003532788.1	0.0	homeobox-leucine zipper protein ATHB-14
Refseq	XP_028243635.1	0.0	homeobox-leucine zipper protein ATHB-14-like
Swissprot	A2XK30	0.0	HOX32_ORYSI; Homeobox-leucine zipper protein HOX32
Swissprot	Q6AST1	0.0	HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBL	A0A445JDN8	0.0	A0A445JDN8_GLYSO; Homeobox-leucine zipper protein HOX32 isoform B
TrEMBL	I1KSN1	0.0	I1KSN1_SOYBN; Uncharacterized protein
STRING	GLYMA08G13110.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34710.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Glyma.08G124400.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Itoh J,Hibara K,Sato Y,Nagato Y Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice. Plant Physiol., 2008. 147(4): p. 1960-75 [PMID:18567825] Li YY, et al. Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice. Rice (N Y), 2016. 9(1): p. 46 [PMID:27624698]