PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G124400.1.p
Common NameGLYMA_08G124400, LOC100807637
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 850aa    MW: 93367.7 Da    PI: 6.6531
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G124400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.88.8e-192279457
                         -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                           ++t+eq+e+Le+++ ++++ps ++r+++ +++    +++++q+kvWFqNrR +ek+
  Glyma.08G124400.1.p 22 YVRYTPEQVEALERVYIECPKPSSSRRQQIIRECpllaNIETKQIKVWFQNRRCREKQ 79
                         6789****************************************************97 PP
2bZIP_1201.5e-06731151860
                          HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1  18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                          rr+R++ ++e  +L++   +L+a Nk L +e+++l+k+v++l 
  Glyma.08G124400.1.p  73 RRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSQLV 115
                          9***************************************985 PP
3START173.91e-541703782205
                          HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS
                START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 
                          +a+e+++++++ka+ ++ +Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++   +l vi +g  g
  Glyma.08G124400.1.p 170 IAQETLAAFLSKATGTAVNWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCLNVLSVIPTGngG 258
                          678999****************************************************.8888888888********************* PP

                          EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
                START  90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                          +++lm+++++a+++l++ Rdf+++Ry+ +l++g++vi+++S++s +  p+    s++vRae+lpSg+li+++++g+s v++v+hvdl+ +
  Glyma.08G124400.1.p 259 TIELMYMQTYAPTTLAAaRDFWTLRYTTSLEDGSLVICERSLTSSTGGPTgpaASNFVRAEMLPSGYLIRSCEGGGSIVHIVDHVDLDVW 348
                          *************************************************9999************************************* PP

                          XXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                START 176 lphwllrslvksglaegaktwvatlqrqce 205
                          +++++lr+l++s  + ++k ++a+l++ ++
  Glyma.08G124400.1.p 349 SVPEVLRPLYESPKFLAQKLTTAALRNVRQ 378
                          *************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.2E-151884IPR001356Homeobox domain
CDDcd000861.09E-152181No hitNo description
SuperFamilySSF466895.56E-162183IPR009057Homeodomain-like
PfamPF000462.2E-162279IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-172379IPR009057Homeodomain-like
PROSITE profilePS5007114.9652480IPR001356Homeobox domain
CDDcd146862.39E-673112No hitNo description
PROSITE profilePS5084824.334160360IPR002913START domain
CDDcd088757.15E-68164380No hitNo description
SMARTSM002342.9E-50169379IPR002913START domain
Gene3DG3DSA:3.30.530.201.9E-21169352IPR023393START-like domain
PfamPF018525.0E-52170378IPR002913START domain
SuperFamilySSF559615.63E-36170381No hitNo description
PfamPF086701.5E-47704848IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 850 aa     Download sequence    Send to blast
MALCMQRDSA SNKQQLMDCG KYVRYTPEQV EALERVYIEC PKPSSSRRQQ IIRECPLLAN  60
IETKQIKVWF QNRRCREKQR KEASRLQTVN RKLSAMNKLL MEENDRLQKQ VSQLVYDNGF  120
MKQQIHTASA TTTTDNSCES VVVSGQRQHQ NPKIQHPQWD ANNPAGLLAI AQETLAAFLS  180
KATGTAVNWV QMIGMKPGPD SIGIVAVSRN CSGVAARACG LVSLEPTKVA EILKDRPSWY  240
RDCRCLNVLS VIPTGNGGTI ELMYMQTYAP TTLAAARDFW TLRYTTSLED GSLVICERSL  300
TSSTGGPTGP AASNFVRAEM LPSGYLIRSC EGGGSIVHIV DHVDLDVWSV PEVLRPLYES  360
PKFLAQKLTT AALRNVRQIA QESSGEVQYG GGRQPAVLRT FSQRLCKGFN DAVNGFVDDG  420
WSLMGNDGVE DVTIGINSSP NKFFSSHYNT SMLPAFGGGV LCAKASMLLQ NVPPALLVRF  480
LREHRSEWAN YGVDAYSSAC LKASPYAVPC ARPSGFPSSH VIIPLAHTIE HEEFLEVVRI  540
EGNAFPPDDV ALACDMYLMQ LCSGIDENAI GACAQLVFAP IDESFADDAL LLPSGFRIIP  600
LDPKTDGPAS TRTLDLASTL ETGSGNARSA GESDLNNYNL RSVLTIAFQF TFENHLRDNV  660
AVMARQYVRN VVRSVQRVAM AIAPSRISTQ LGPKSLPGPP EALTLARWIC KSYSLHTCTE  720
LFSVESTSGD AILKQLWHHP DAILCCSVKT NASPVFTFAN QAGLDMLETT LVALQDIMLD  780
KVLDEAGRKF LCIEFSKIMQ QGFAYLPAGI CVSSMNRPVS YEQAIAWKVL DDDDSNHCLA  840
FVFMNWSFV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.194220.0hypocotyl| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G124400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003532788.10.0homeobox-leucine zipper protein ATHB-14
RefseqXP_028243635.10.0homeobox-leucine zipper protein ATHB-14-like
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A445JDN60.0A0A445JDN6_GLYSO; Homeobox-leucine zipper protein HOX32 isoform A
TrEMBLI1KSN00.0I1KSN0_SOYBN; Uncharacterized protein
STRINGGLYMA08G13110.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51763353
Representative plantOGRP6511671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]