PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.08G120600.1.p | ||||||||
Common Name | GLYMA_08G120600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 244aa MW: 27591.1 Da PI: 10.2577 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 95.8 | 1.9e-30 | 25 | 74 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++ rqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+ Glyma.08G120600.1.p 25 KRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYA 74 79***********************************************8 PP | |||||||
2 | K-box | 110 | 2.5e-36 | 93 | 190 | 4 | 100 |
K-box 4 ssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 ssg + ++ea+a+ +qqe+akL+ +i+nLq+ +R+++Ge+L++++ k+L++Le++Lek++++iRskKne+l+++ie+++k+e l+++n+ Glyma.08G120600.1.p 93 SSGGRsASEANAQFYQQEAAKLRVQISNLQNHNRQMMGEGLSTMNGKDLKNLETKLEKGISRIRSKKNEMLFAEIEHMKKREIYLHNDNQ 182 44444599********************************************************************************** PP K-box 93 aLrkklee 100 Lr+k+ e Glyma.08G120600.1.p 183 LLRAKIGE 190 *****965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.726 | 17 | 77 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.8E-42 | 17 | 76 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.35E-32 | 18 | 90 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.19E-42 | 18 | 87 | No hit | No description |
PRINTS | PR00404 | 2.6E-32 | 19 | 39 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 19 | 73 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-26 | 26 | 73 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-32 | 39 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-32 | 54 | 75 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.0E-26 | 101 | 188 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.597 | 104 | 194 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MAFPNQSMSS ESPQRKMGRG KIEIKRIENT TSRQVTFCKR RNGLLKKAYE LSVLCDAEVA 60 LIVFSNRGRL YEYANNSVKA SIERYKKASS DSSSGGRSAS EANAQFYQQE AAKLRVQISN 120 LQNHNRQMMG EGLSTMNGKD LKNLETKLEK GISRIRSKKN EMLFAEIEHM KKREIYLHND 180 NQLLRAKIGE GERSHHNVNG LSGTTSYESM QSQFDSRGFF QVTGLQPNNN NQYAGQDMSL 240 QFV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 5e-20 | 17 | 94 | 1 | 78 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 5e-20 | 17 | 94 | 1 | 78 | Myocyte-specific enhancer factor 2B |
1tqe_R | 5e-20 | 17 | 94 | 1 | 78 | Myocyte-specific enhancer factor 2B |
1tqe_S | 5e-20 | 17 | 94 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_A | 5e-20 | 17 | 94 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_B | 5e-20 | 17 | 94 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_C | 5e-20 | 17 | 94 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_D | 5e-20 | 17 | 94 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_E | 5e-20 | 17 | 94 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_F | 5e-20 | 17 | 94 | 1 | 78 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.37434 | 0.0 | flower |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.08G120600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093434 | 0.0 | BT093434.1 Soybean clone JCVI-FLGm-14I9 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025985159.1 | 0.0 | uncharacterized protein LOC100776263 isoform X2 | ||||
Swissprot | Q43585 | 1e-113 | AG_TOBAC; Floral homeotic protein AGAMOUS | ||||
TrEMBL | I1KSJ1 | 1e-179 | I1KSJ1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA08G12730.2 | 1e-180 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF684 | 29 | 102 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-103 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.08G120600.1.p |
Publications ? help Back to Top | |||
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