PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G118200.1.p
Common NameGLYMA_08G118200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 262aa    MW: 29260.6 Da    PI: 5.7321
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G118200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.95.8e-3085143259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers  dp+++++tY+++Hnh+
  Glyma.08G118200.1.p  85 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSCVDPTMLVVTYSSDHNHP 143
                          69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.4E-3179145IPR003657WRKY domain
SuperFamilySSF1182906.67E-2682145IPR003657WRKY domain
SMARTSM007741.1E-3484144IPR003657WRKY domain
PROSITE profilePS5081131.75585145IPR003657WRKY domain
PfamPF031061.8E-2586143IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MDSKFRKNNR NSYTSEQDQD TDHDVAQENI AESPPSSTVF NIDGLVPSPT PSSKRRRAIQ  60
KRVVQIPMKE TEGCRLKGES NTPPSDSWAW RKYGQKPIKG SPYPRGYYRC SSSKGCPARK  120
QVERSCVDPT MLVVTYSSDH NHPWPPSRNH ARPTKKPEPV PDPVQPEPEE KFADLGGDDS  180
MITTAEELGW LGEMETTSST VLESPIMATG YHADVALIPM REEDESLFAD LGELPECSVV  240
FRQGLLTERR RYTAPWCGTT S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B9e-2061145679Disease resistance protein RRS1
5w3x_D9e-2061145679Disease resistance protein RRS1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.360800.0cotyledon| hypocotyl| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G118200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0195840.0EU019584.1 Glycine max WRKY48 (WRKY48) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237221.20.0WRKY transcription factor 48
RefseqXP_028243595.10.0probable WRKY transcription factor 65 isoform X2
SwissprotQ9LP568e-79WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLA0A0R4J3W00.0A0A0R4J3W0_SOYBN; Uncharacterized protein
TrEMBLA0A445JDE00.0A0A445JDE0_GLYSO; Putative WRKY transcription factor 65
STRINGGLYMA08G12460.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27703475
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.14e-81WRKY DNA-binding protein 65
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]