PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.08G116700.1.p

Common Name

GLYMA_08G116700, LOC100787138

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

G2-like

Protein Properties

Length: 403aa MW: 45934.7 Da PI: 7.6126

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.08G116700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.3	1.3e-31	83	136	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +Fv+ave+LGG+e+AtPk +l+lm+v gL+++hvkSHLQ+YR+ Glyma.08G116700.1.p 83 PRLRWTPELHLSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRS 136 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.7E-30	79	137	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.218	79	139	IPR017930	Myb domain
SuperFamily	SSF46689	8.6E-15	81	137	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.7E-22	83	138	IPR006447	Myb domain, plants
Pfam	PF00249	3.0E-9	84	135	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MSEEYERSEE HADDDSSMGS SQKCSSFDLN EEASSEDNND NDEGYDEEAK DEGTSTNKSS 60 SITKEGSNER RGGVRQYVRS KMPRLRWTPE LHLSFVHAVE RLGGQERATP KLVLQLMNVR 120 GLSIAHVKSH LQMYRSKKLD EAGQVLGQTY KSTHELGRIF HVAHQSMNPR QHFKMGNGGI 180 ILASDYNDRS YFHGLMHPSS LSPSQSKAID SRHQQWYFNS HQPYRRPSYF SNEVVSSTTL 240 QTQGRSMSSN QINLMDATSI APMKPSQFLE EKKWPPLDIM NNHHWKKRLP ANISSNSGSQ 300 PVVHQFGTTS PSLRPSELNF GNNTRISWEH LSNSDEHRNY SNSLKLELEP LFRIKSNQEK 360 LQKEKQWAPD LRLSLSQRDG NNDGKTDHCR ETQEINTKLS LS*

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MSEEYERSEE HADDDSSMGS SQKCSSFDLN EEASSEDNND NDEGYDEEAK DEGTSTNKSS  60
SITKEGSNER RGGVRQYVRS KMPRLRWTPE LHLSFVHAVE RLGGQERATP KLVLQLMNVR  120
GLSIAHVKSH LQMYRSKKLD EAGQVLGQTY KSTHELGRIF HVAHQSMNPR QHFKMGNGGI  180
ILASDYNDRS YFHGLMHPSS LSPSQSKAID SRHQQWYFNS HQPYRRPSYF SNEVVSSTTL  240
QTQGRSMSSN QINLMDATSI APMKPSQFLE EKKWPPLDIM NNHHWKKRLP ANISSNSGSQ  300
PVVHQFGTTS PSLRPSELNF GNNTRISWEH LSNSDEHRNY SNSLKLELEP LFRIKSNQEK  360
LQKEKQWAPD LRLSLSQRDG NNDGKTDHCR ETQEINTKLS LS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-17	84	138	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-17	84	138	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-17	84	138	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-17	84	138	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-17	84	138	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-17	84	138	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-17	84	138	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-17	84	138	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-17	84	138	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-17	84	138	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-17	84	138	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-17	84	138	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.08G116700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	5e-64	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006585172.1	0.0	two-component response regulator ORR24 isoform X1
Refseq	XP_028245235.1	0.0	two-component response regulator ORR24-like isoform X1
TrEMBL	A0A445JDC1	0.0	A0A445JDC1_GLYSO; Putative Myb family transcription factor isoform A
TrEMBL	K7L645	0.0	K7L645_SOYBN; Uncharacterized protein
STRING	GLYMA08G12320.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3012	32	70
Representative plant	OGRP285	15	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	8e-37	G2-like family protein

Link Out ? help Back to Top
Phytozome	Glyma.08G116700.1.p
Entrez Gene	100787138