PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G115300.1.p
Common NameGLYMA_08G115300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 209aa    MW: 23743.8 Da    PI: 6.7882
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G115300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_144.14.3e-1472130563
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          ++ +r+ +NRe+ArrsR RK++ +e L    ++L++eN+++  ++   ++++ ++++e+
  Glyma.08G115300.1.p  72 RKRKRMLSNRESARRSRMRKQQHLEGLSAQLDQLKKENTQMNTNIGISTQLYLNVEAEN 130
                          6889***************************************9999999988887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.3E-1768132IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.40470116IPR004827Basic-leucine zipper domain
PfamPF001702.2E-1071120IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.2E-1072115No hitNo description
SuperFamilySSF579591.76E-1172124No hitNo description
CDDcd147021.15E-1873123No hitNo description
PROSITE patternPS0003607590IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MSSPVISEIL LSGFTINSSL RRRTHLVQSF SVVFLHWFYY MASPGGSGTY SSGSSSLQNS  60
GSEGDRDIME QRKRKRMLSN RESARRSRMR KQQHLEGLSA QLDQLKKENT QMNTNIGIST  120
QLYLNVEAEN AILRAQMEEL SKRLNSLNEM ISLINSTTTT NNCLMFDEAQ ETTTQLFNDC  180
GFMDAWNYGI PLNQQIMAYA DNDMLMMY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18491RRSRMRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.214410.0flower| leaf| root| somatic embryo
Gma.337970.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm and radicle tip in early germinating seeds. {ECO:0000269|PubMed:23461773}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G115300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311370.0KT031137.1 Glycine max clone HN_CCL_138 BZIP transcription factor (Glyma08g12170.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237147.11e-121bZIP transcription factor bZIP110
RefseqXP_028243564.11e-121bZIP transcription factor 11-like
SwissprotC0Z2L52e-36BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A0R0IKI91e-152A0A0R0IKI9_SOYBN; Uncharacterized protein
STRINGGLYMA08G12170.11e-120(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61334147
Representative plantOGRP5511678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34590.14e-35G-box binding factor 6
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]