PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.08G105400.1.p | ||||||||
Common Name | AGL3L, GLYMA_08G105400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 187aa MW: 20964.2 Da PI: 8.9464 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.9 | 2.7e-28 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienks rq+tfskRrng++KKA ELS+LCda+va++ifsstgklye + Glyma.08G105400.1.p 9 KRIENKSTRQITFSKRRNGLMKKARELSILCDAKVALLIFSSTGKLYELC 58 79*********************************************966 PP | |||||||
2 | K-box | 42 | 4e-15 | 79 | 161 | 10 | 92 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 +++k+++l+ e+a + + q +Rh+ +Le Ls+ +L++Le+ + +l++iRs K++l++e++ +l+kk ++l+++n Glyma.08G105400.1.p 79 TDTKSQELCFEIADIWSGSAFSQMIKRHFGVSELEHLSVSDLMELEKLTHAALSRIRSAKMRLMMESVVNLKKKIEALEKTND 161 5677888888888888888888888999999************************************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.3E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.557 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 8.74E-35 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 6.02E-30 | 2 | 89 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-25 | 10 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.1E-12 | 80 | 161 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 7.943 | 83 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MGKKKVEIKR IENKSTRQIT FSKRRNGLMK KARELSILCD AKVALLIFSS TGKLYELCNG 60 DSLAEVVQQY WDHLGASGTD TKSQELCFEI ADIWSGSAFS QMIKRHFGVS ELEHLSVSDL 120 MELEKLTHAA LSRIRSAKMR LMMESVVNLK KKIEALEKTN DVNNVVTRSI DCDQTDGVTH 180 NLFPGL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-18 | 1 | 73 | 1 | 72 | MEF2C |
5f28_B | 1e-18 | 1 | 73 | 1 | 72 | MEF2C |
5f28_C | 1e-18 | 1 | 73 | 1 | 72 | MEF2C |
5f28_D | 1e-18 | 1 | 73 | 1 | 72 | MEF2C |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.11362 | 0.0 | flower| leaf| meristem| pod| vegetative bud |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.08G105400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ636609 | 0.0 | HQ636609.1 Glycine max agamous-like 3 protein (AGL3L) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001241059.1 | 1e-136 | agamous-like MADS-box protein AGL3-like | ||||
Refseq | XP_028243466.1 | 1e-136 | protein MADS AFFECTING FLOWERING 5-like | ||||
TrEMBL | A0A445JCT2 | 1e-134 | A0A445JCT2_GLYSO; Agamous-like MADS-box protein AGL3 isoform A | ||||
TrEMBL | G3E7M7 | 1e-134 | G3E7M7_SOYBN; Agamous-like 3 protein | ||||
STRING | GLYMA08G11110.1 | 1e-135 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03710.3 | 1e-39 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.08G105400.1.p |
Entrez Gene | 100778392 |