PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G105200.1.p
Common NameGLYMA_08G105200, LOC100814958
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CAMTA
Protein Properties Length: 966aa    MW: 107767 Da    PI: 6.1198
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G105200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1167.12.8e-52131292117
                 CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahsee 90 
                          ++e ++rwlk+ e++ iL+n+ek+++t+e +++p+sgsl+L+n++++ryfr+DG++w+kk  g+tv E+he+LKv +ve+l+cyYa++e+
  Glyma.08G105200.1.p  13 HQEaQARWLKPAEVMYILQNHEKFQFTQEVPQQPTSGSLFLFNKRILRYFRRDGHNWHKKSGGRTVGEAHERLKVLNVEALNCYYARGEQ 102
                          677799************************************************************************************ PP

                 CG-1  91 nptfqrrcywlLeeelekivlvhylev 117
                          np fqrr+yw+L+ ++e+ivlvhy+++
  Glyma.08G105200.1.p 103 NPAFQRRSYWMLDPAYEHIVLVHYRNT 129
                          *************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143775.9419135IPR005559CG-1 DNA-binding domain
SMARTSM010761.3E-6712130IPR005559CG-1 DNA-binding domain
PfamPF038594.5E-4515128IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.102.3E-8409497IPR013783Immunoglobulin-like fold
SuperFamilySSF812964.51E-18411494IPR014756Immunoglobulin E-set
CDDcd001024.10E-5411496No hitNo description
PfamPF018333.6E-7411484IPR002909IPT domain
Gene3DG3DSA:1.25.40.202.7E-16606701IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.751607699IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.03E-16610701IPR020683Ankyrin repeat-containing domain
CDDcd002044.53E-14612699No hitNo description
PfamPF127961.1E-8623701IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0038640669IPR002110Ankyrin repeat
PROSITE profilePS5008811.06640672IPR002110Ankyrin repeat
SMARTSM002481300679708IPR002110Ankyrin repeat
SMARTSM0001583757779IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.437759787IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525403.19E-6797855IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000152.5808830IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.84809838IPR000048IQ motif, EF-hand binding site
PfamPF006120.024811829IPR000048IQ motif, EF-hand binding site
SMARTSM000151.8E-4831853IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.212832857IPR000048IQ motif, EF-hand binding site
PfamPF006122.9E-5834853IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 966 aa     Download sequence    Send to blast
MTPGYEYDIN DLHQEAQARW LKPAEVMYIL QNHEKFQFTQ EVPQQPTSGS LFLFNKRILR  60
YFRRDGHNWH KKSGGRTVGE AHERLKVLNV EALNCYYARG EQNPAFQRRS YWMLDPAYEH  120
IVLVHYRNTS EGKLSSGAGA QLSPSSSVYT QSPSPYSTQN PGSTSILGDS YEPNQSFSSP  180
GSTKVTSEIF VLNNKMGHMD WADTESGTSS ELEVTQALRR LEVQLSLNED NFEDIVSFGS  240
KHETVHDSNP KHDQRVISNQ EQSAAFSRPD DQGLFYDGCN GRQDHGYPDA NEKALWTEQL  300
ESHKSSSAVK LPQKNVYMPA ENENSVSSAR RVPVSNQENS HWLNFNCNNS ENSVFSQPQG  360
VDEVKFPAYS SMLETQVINS DYYETLFDQS QIGAPPDANS SLTVAQKQKF TIKTISPEWG  420
YATETTKVIV VGSFLCHPSD SAWACMFGDV EVPIEIIQDG VISCEAPSHL PGKVTLCITS  480
GNWESCSEVR EFEYHDKTNS CTRCTQSETE ATRSPEELLL LVRLGQMLLS ASTIKNDNIE  540
SGIPLIKPKA DDDSWSHIID ALLVGSGTSS GTVDWLLEEL LKDKFQQWLS FRSREKDEET  600
GCSLSKKEQG IIHMVAGLGF EWALNPILTC GVNINFRDIN GWTALHWAAR FGREKMVASL  660
IASGASAGAV TDPNAQDPTG KTAASIAASS GHKGLAGYLS EIAVTSHLSS LTLEESESSK  720
SSAYLQADRT VNSVSKENLT ANEDQASLKD TLAAIRNVTQ AAARIQSAFR SHSFRKRRAR  780
EATASTGGIG TISEISAMSK LAFRNSHEYN SAALSIQKKY RGWKGRRDFL ALRQKVVKIQ  840
AHVRGYQVRK HYKVIWAVGI LDKVVLRWRR KGAGLRGFRQ EMDINENEDE DILKVFRKQK  900
LDVEIEEAVS RVLSMVDSPD AREQYHRMLE KYRQAKAELA GTSDEASLST SVGDDLFMDD  960
FYPFP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.132900.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12218065}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G105200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0965370.0BT096537.1 Soybean clone JCVI-FLGm-10A15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003532724.20.0calmodulin-binding transcription activator 4 isoform X2
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A0R0IJZ00.0A0A0R0IJZ0_SOYBN; Uncharacterized protein
STRINGGLYMA08G11080.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45482950
Representative plantOGRP5621565
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]