PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.08G100100.2.p | ||||||||
Common Name | GLYMA_08G100100, LOC100806203 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 905aa MW: 100284 Da PI: 6.6448 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.7 | 1.3e-24 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+lt sd++++g +++p++ ae+ +++++++ +l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F Glyma.08G100100.2.p 127 FCKILTASDTSTHGGFSVPRRAAEKVfppldfSQQPPCQ-ELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI- 214 99*****************************86666675.9************************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 ++++ +l+++++r+ Glyma.08G100100.2.p 215 -WNEKNQLLLGIRRA 228 .8899999****997 PP | |||||||
2 | Auxin_resp | 120.1 | 1.8e-39 | 253 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld++rWpnS+Wrs+k Glyma.08G100100.2.p 253 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSIRWPNSHWRSVK 336 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.15E-48 | 112 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-42 | 120 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.38E-23 | 126 | 227 | No hit | No description |
SMART | SM01019 | 3.0E-25 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.2E-23 | 127 | 228 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.028 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.4E-34 | 253 | 336 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 1.05E-6 | 773 | 853 | No hit | No description |
Pfam | PF02309 | 1.1E-6 | 774 | 862 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 22.736 | 777 | 861 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 905 aa Download sequence Send to blast |
MKLSSPGFSP PPQEGEKRVL DSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAVSTNRE 60 VDGHIPNYPS LPPQLICQLH NLTMHADTET DEVYAQMTLQ PLNPQEQKGA YLPAELGTPS 120 KQPTNYFCKI LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPCQELIAR DLHGNEWKFR 180 HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQPVMPSSVL 240 SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM 300 LFETEESSVR RYMGTITGIS DLDSIRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT 360 TFPMYPSPFP LRLKRPWPPG LPLFHGLKDD DFGINSSLMW LRDTDRGLPS LNFQGIGVSP 420 WMQPRLDPSM VNYQSDMYQA MAAAALQDMW TSNPSKQHPT SSIQFQQPQN FPNQTSPLMQ 480 TQLLQQSPSQ QAFPNSQENP HPSPSQSQAQ TQTHFQQHLQ HQHSFNNQNQ HHLLPQQQQQ 540 PQQPQLQQQQ VVDHQQISSV VSTMSQFVSA AQSQSPPMQA ISSLGHQQSF SDSNGNPTTT 600 AIVSPLHSIL DSFPQDDTSH LLSLPRSTSW VPVQHSTAWP PSKRVVVDPL LSSGASQCVL 660 PQVEQLGQPH STMAQNGIAL PAFPGRECTI EGSNDPQNHL LFGVNIEPSS LLMHNGMSSL 720 KGVSSNSDSP TIPFQSSNYL NTTGPDSSLN PGMTHNIGET GFLQTPENGG QGNPSNKTFV 780 KVYKSGSFGR SLDITKFTSY PELRSELARM FGLEGELEDP VRSGWQLVFV DQENDVLLLG 840 DGPWPEFVNS VGYIKILSPQ EVQQMGNNEL ELLNSVPIQR LSNGVCEDPR NLSTGITTVG 900 SLNY* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-158 | 13 | 357 | 43 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.58732 | 0.0 | hypocotyl| root| stem |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.08G100100.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003531170.1 | 0.0 | auxin response factor 6 isoform X2 | ||||
Swissprot | A2X1A1 | 0.0 | ARFF_ORYSI; Auxin response factor 6 | ||||
Swissprot | Q6H6V4 | 0.0 | ARFF_ORYSJ; Auxin response factor 6 | ||||
TrEMBL | I1KRX3 | 0.0 | I1KRX3_SOYBN; Auxin response factor | ||||
STRING | GLYMA08G10550.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | auxin response factor 6 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.08G100100.2.p |
Entrez Gene | 100806203 |
Publications ? help Back to Top | |||
---|---|---|---|
|